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yeast 8.4.1
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@BenjaSanchez BenjaSanchez released this 20 Jul 08:57
v8.4.1
72c4d3b
  • Features:
    • Switched to pip-tools for managing python dependencies, distinguishing between user requirements /requirements/requirements.txt and developer requirements /requirements/dev-requirements.txt (PR #235).
  • Fixes:
    • Closes #201: Changed generic protein name to avoid confusion (PR #237).
    • Closes #205: Finished correcting reactions' stoichiometry based on KEGG data (PR #237).
    • Closes #215: Corrected wrong gene rule in reaction (PR #237).
    • Closes #225: Moved MNX rxn ids from notes to the proper annotation field (PR #226).
  • Documentation:
    • Closes #223: Clarified releasing steps, including authorship criteria for Zenodo releases, in contributing guidelines (PR #233).
    • Closes #227: Removed authorships/dates from all scripts, as it is redundant information (PR #230).
    • Added admin guidelines for managing python dependencies (PR #235).
    • Included links for model visualization in README file (PR #240).

NOTE: This release is (still) made with the development version of COBRA toolbox, as their latest release is not able to preserve BiGG ids.

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