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yeast 8.5.0

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@edkerk edkerk released this 02 Jul 17:10
· 204 commits to main since this release
  • Features:
    • Set up memote as GitHub Action for pull requests (PR #162)
    • Moved old subSystems to reaction annotations (in rxnMiriams or rxnKEGGpathways) (PR #253)
  • Fixes:
    • Combine glycolysis + gluconeogenesis as single KEGG pathway annotations (PR #251).
    • Closes #252: Correct grRule of r_4590 (PR #255).
    • Closes #254: Corrects name of s_1218 (PR #255).
    • saveYeastModel.m now correctly handles Unicode characters (PR #255).
    • Closes #238: Correct indentation of yeastGEM.yml (PR #236 and #255).
  • Chore:
    • Update dependencies in *requirements.txt (PR #256).
    • Minor changes in model file formatting due to updates in COBRA+RAVEN toolboxes (PR #253).
  • Refactor:
    • Closes #232: Follow standard-GEM specifications (PR #257).
    • Closes #258: Rename git branches master and devel to main and develop (PR #261).