Merge pull request #17 from TRON-Bioinformatics/split-multimapper #62
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name: Automated tests | |
on: [push] | |
jobs: | |
test: | |
runs-on: ubuntu-20.04 | |
steps: | |
- uses: actions/checkout@v2 | |
- uses: actions/setup-java@v2 | |
with: | |
distribution: 'zulu' # See 'Supported distributions' for available options | |
java-version: '11' | |
- uses: conda-incubator/setup-miniconda@v2 | |
with: | |
auto-update-conda: true | |
channels: defaults,conda-forge,bioconda | |
- name: Install dependencies | |
run: | | |
apt-get update && apt-get --assume-yes install wget make procps software-properties-common | |
wget -qO- https://get.nextflow.io | bash && cp nextflow /usr/local/bin/nextflow | |
conda update conda | |
- name: Cache conda environments | |
uses: actions/cache@v2 | |
with: | |
path: | | |
/home/runner/work/tronflow-bam-preprocessing/tronflow-bam-preprocessing/work/conda | |
key: ${{ runner.os }}-tronflow-bam-preprocessing | |
- name: Run tests | |
run: | | |
export NXF_VER=22.04.5 | |
make |