changed bam_name to name in bqsr

TRON-Bioinformatics · Feb 28, 2024 · 0933c68 · 0933c68
1 parent f388db6
commit 0933c68
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/modules/05_bqsr.nf b/modules/05_bqsr.nf
@@ -18,7 +18,7 @@ process BQSR {
     val(reference)
 
     output:
-    tuple val("${name}"), val("${type}"), val("${params.output}/${name}/${bam_name}.preprocessed.bam"), emit: recalibrated_bams
+    tuple val("${name}"), val("${type}"), val("${params.output}/${name}/${name}.preprocessed.bam"), emit: recalibrated_bams
     file "${name}.recalibration_report.grp"
     file "${name}.preprocessed.bam"
     file "${name}.preprocessed.bai"