Removes pyscaffold and updates readme with new development environment instructions and examples

.github/workflows/snippets.yml

@@ -0,0 +1,22 @@
+name: Formatting and Snippets
+on:
+  push:
+jobs:
+  format_and_snippets:
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v3
+    - name: Run MarkdownSnippets
+      run: |
+        dotnet tool install --global MarkdownSnippets.Tool
+        mdsnippets ${GITHUB_WORKSPACE}
+      shell: bash
+    - name: Git Commit and Push
+      uses: github-actions-x/[email protected]
+      with:
+        github-token: "${secrets.GITHUB_TOKEN}"
+        commit-message: "d updated markdown snippets"
+        rebase: 'true'
+        push-branch: 'master'
+        name: github actions
+        email: [email protected]

.github/workflows/ubuntu.yml

@@ -11,7 +11,7 @@ jobs:
     strategy:
       matrix:
         os: ["ubuntu-latest"]
-        python-version: ['3.8', '3.9']
+        python-version: ['3.8', '3.9', '3.10']
         ymlfile: ['environment.yml']
     name: Py${{ matrix.python-version }} @ ${{ matrix.os }}
     runs-on: ${{ matrix.os }}
@@ -27,7 +27,7 @@ jobs:
           auto-update-conda: true
           python-version: ${{ matrix.python-version }}
           environment-file: ${{ matrix.ymlfile }}
-          activate-environment: equi7grid_env
+          activate-environment: equi7grid
           auto-activate-base: false
       - name: Print infos
         shell: bash -l {0}
@@ -50,7 +50,7 @@ jobs:
       - name: Install package and test
         shell: bash -l {0}
         run: |
-          pip install -e .
+          pip install -e .[testing]
           pytest --cache-clear
       - name: Upload Coverage
         shell: bash -l {0}
@@ -64,16 +64,9 @@ jobs:
         shell: bash -l {0}
         run: |
           git status
-          pip install setuptools_scm
-          if [ ${{ matrix.os }} == "windows-latest" ]
-          then
-            # build whls on windows
-            pip install wheel
-            python setup.py bdist_wheel --dist-dir .artifacts/dist
-          else
-            # build dist on linux
-            python setup.py sdist --dist-dir .artifacts/dist
-          fi
+          make dist
+          # build dist on linux
+          python setup.py sdist --dist-dir .artifacts/dist
           ls .artifacts/dist
       - name: Upload Artifacts
         uses: actions/upload-artifact@v2

.github/workflows/upload_pypi.yml

@@ -26,7 +26,7 @@ jobs:
 
       - name: Build and Upload to pypi
         run: |
-          python setup.py sdist bdist_wheel
+          make dist
           python -m twine upload dist/*
         env:
           TWINE_USERNAME: __token__

.github/workflows/windows.yml

@@ -7,17 +7,16 @@ on:
     - cron: '0 0 * * *' # daily
 
 env:
-  GDAL_DATA: C:\Miniconda3\envs\equi7grid_env\Library\share\gdal
-  PROJ_LIB: C:\Miniconda3\envs\equi7grid_env\Library\share\proj
-  GDAL_DRIVER_PATH: C:\Miniconda3\envs\equi7grid_env\Library\bin
+  PROJ_LIB: C:\Miniconda3\envs\equi7grid\Library\share\proj
+  USE_PATH_FOR_GDAL_PYTHON: YES
 
 jobs:
   build:
     strategy:
       matrix:
         os: ["windows-latest"]
-        python-version: ['3.8', '3.9']
-        ymlfile: ['environment.yml']
+        python-version: ['3.8', '3.9', '3.10']
+        ymlfile: ['environment_win.yml']
     name: Py${{ matrix.python-version }} @ ${{ matrix.os }}
     runs-on: ${{ matrix.os }}
 
@@ -31,8 +30,8 @@ jobs:
           miniconda-version: "latest"
           auto-update-conda: true
           python-version: ${{ matrix.python-version }}
-          environment-file: environment.yml
-          activate-environment: equi7grid_env
+          environment-file: environment_win.yml
+          activate-environment: equi7grid
           auto-activate-base: false
       - name: Print infos
         shell: bash -l {0}
@@ -43,8 +42,9 @@ jobs:
           pip list
           which pip
           which python
+          which gdalwarp
       - name: Install package and test
         shell: bash -l {0}
         run: |
-          pip install -e .
+          pip install -e .[testing]
           pytest --cache-clear

.gitignore

@@ -42,3 +42,5 @@ cover/*
 MANIFEST
 /Equi7Grid.egg-info/
 /equi7grid/Equi7Grid_old.py
+
+venv/

Makefile

@@ -0,0 +1,63 @@
+.ONESHELL:
+SHELL = /bin/bash
+
+.PHONY: help clean environment install test version dist
+
+CONDA_ENV_DIR = $(shell conda info --base)/envs/equi7grid
+CONDA_ACTIVATE = source $$(conda info --base)/etc/profile.d/conda.sh ; conda activate ; conda activate
+TEST_ENV =
+
+help:
+	@echo "make clean"
+	@echo " clean all python build/compilation files and directories"
+	@echo "make venv"
+	@echo " create the base virtualenv environment for the project"
+	@echo "make conda"
+	@echo " create the base conda environment for the project"
+	@echo "make test"
+	@echo " run test with coverage"
+	@echo "make version"
+	@echo " update _version.py with current version tag"
+	@echo "make dist"
+	@echo " build the package ready for distribution and update the version tag"
+
+clean:
+	find . -name '*.pyc' -exec rm --force {} +
+	find . -name '*.pyo' -exec rm --force {} +
+	find . -name '*~' -exec rm --force {} +
+	rm --force .coverage
+	rm --force --recursive .pytest_cache
+	rm --force --recursive build/
+	rm --force --recursive dist/
+	rm --force --recursive *.egg-info
+
+$(CONDA_ENV_DIR):
+	@echo "creating new base equi7grid conda environment..."
+	conda create -y -c conda-forge -n equi7grid python=3.10 pip mamba
+	$(CONDA_ACTIVATE) equi7grid
+	mamba install -y -c conda-forge gdal numpy scipy
+	if [ $(TEST_ENV) ]; then pip install -e .[testing]; else pip install -e .; fi
+	@echo "... finished."
+
+conda: $(CONDA_ENV_DIR)
+	@echo -e "conda environment is ready. To activate use:\n\tconda activate equi7grid"
+
+venv/bin/activate:
+	@echo "creating new base equi7grid virtualenv environment..."
+	python3 -m venv venv
+	source venv/bin/activate; pip install pygdal=="$(shell gdal-config --version).*"; if [ $(TEST_ENV) ]; then pip install -e .[testing]; else pip install -e .; fi
+	@echo "... finished."
+
+venv: venv/bin/activate
+	@echo -e "virtualenv environment is ready. To activate use:\n\tsource venv/bin/activate"
+
+test:
+	pytest -rsx --verbose --color=yes --cov=equi7grid --cov-report term-missing
+
+version:
+	echo -e "__version__ = \"$(shell git describe --always --tags --abbrev=0)\"\n__commit__ = \"$(shell git rev-parse --short HEAD)\"" > src/equi7grid/_version.py
+
+dist: version
+	pip3 install build twine
+	python3 -m build
+