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Update Create_db_and_tables.py #1

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Update Create_db_and_tables.py #1

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42 changes: 0 additions & 42 deletions Create_db_and_tables.py
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Original file line number Diff line number Diff line change
Expand Up @@ -20,48 +20,6 @@
)
''',
'''
CREATE TABLE studies (
study_id TEXT PRIMARY KEY,
study_category TEXT,
study_name TEXT,
link TEXT
)
''',
'''
CREATE TABLE genes (
gene_id TEXT PRIMARY KEY,
species_id TEXT,
FOREIGN KEY (species_id) REFERENCES species (species_id)
)
''',
'''
CREATE TABLE runs (
run_id TEXT PRIMARY KEY,
condition TEXT,
study_id TEXT,
metadata TEXT,
FOREIGN KEY (study_id) REFERENCES studies (study_id)
)
''',
'''
CREATE TABLE study_species (
study_id TEXT,
species_id TEXT,
FOREIGN KEY (study_id) REFERENCES studies (study_id),
FOREIGN KEY (species_id) REFERENCES species (species_id)
)
''',
'''
CREATE TABLE run_genes (
run_id TEXT,
gene_id TEXT,
count_value FLOAT,
tpm_value FLOAT,
FOREIGN KEY (run_id) REFERENCES runs (run_id),
FOREIGN KEY (gene_id) REFERENCES genes (gene_id)
)
''',
'''
CREATE TABLE differential_expression (
gene_id TEXT,
log2FoldChange FLOAT,
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