Fixed configurations (#12)

TechnionComputationalMRILab · Mar 11, 2024 · 1f9204a · 1f9204a
1 parent 7877de7
commit 1f9204a
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Showing 3 changed files with 36 additions and 14 deletions.
diff --git a/src/pd_dwi/configurations/xgboost/F.yaml b/src/pd_dwi/configurations/xgboost/F.yaml
@@ -16,11 +16,18 @@ dataset:
 
 pipeline:
   features_transformer:
-    radiomics:
-      imageType:
-        Original: {}
-      setting:
-        resampledPixelSpacing:  [1.27,1.27,4.0]
+      encoders: # encoder names format is {time point}_{image}
+        - image: F
+          mask: DWI MASK
+          time_points:
+            - T0
+            - T1
+            - T2
+      engine:
+        imageType:
+          Original: { }
+        setting:
+          resampledPixelSpacing: [ 1.27,1.27,4.0 ]
   feature_selection:
     k: 100
   classifier:

diff --git a/src/pd_dwi/configurations/xgboost/adc0100600800.yaml b/src/pd_dwi/configurations/xgboost/adc0100600800.yaml
@@ -17,10 +17,18 @@ dataset:
 pipeline:
   features_transformer:
     radiomics:
-      imageType:
-        Original: {}
-      setting:
-        resampledPixelSpacing:  [1.27,1.27,4.0]
+      encoders: # encoder names format is {time point}_{image}
+        - image: ADC 0100600800
+          mask: DWI MASK
+          time_points:
+            - T0
+            - T1
+            - T2
+      engine:
+        imageType:
+          Original: {}
+        setting:
+          resampledPixelSpacing:  [1.27,1.27,4.0]
   feature_selection:
     k: 100
   classifier:

diff --git a/src/pd_dwi/configurations/xgboost/adc100600800.yaml b/src/pd_dwi/configurations/xgboost/adc100600800.yaml
@@ -16,11 +16,18 @@ dataset:
 
 pipeline:
   features_transformer:
-    radiomics:
-      imageType:
-        Original: {}
-      setting:
-        resampledPixelSpacing:  [1.27,1.27,4.0]
+      encoders: # encoder names format is {time point}_{image}
+        - image: ADC 100600800
+          mask: DWI MASK
+          time_points:
+            - T0
+            - T1
+            - T2
+      engine:
+        imageType:
+          Original: {}
+        setting:
+          resampledPixelSpacing:  [1.27,1.27,4.0]
   feature_selection:
     k: 100
   classifier: