v0.1.1 - Cohesive build

This release is about being cohesive in function usage, imports, and parallelism.
Parallelism was added to prediction, each read in the sample file spawns a concurrent process.
Also, some cleaning and bugfix was performed along the way.

Upgrades :

• Added multithreading support to prediction
• Moved predict loop to dedicated module
• Added scripts to plot graphs from results

Fixes :

• Removed bug where read threshold inferior to 10kb would crash the software
• Removed bug where building database would fail if a specie had only fragments of length inferior to threshold

v0.1.0 - Core features release

Fully functional release, featuring :

• Reference genome gathering
• Database creation
• Model creation
• Sample creation
• Sample prediction

Lightweight implementation of the original software on master branch, with only core features, redesigned to be more flexible, accepting letters over a wider alphabet.
No tools for downstream analysis provided. Only outputs a report in .json format per sample.

Available commands :

usage: wisp [-h] [-l] {build,predict} ...

Bacteria family identification tool.

Subcommands:
  {build,predict}  Available subcommands
    build          Creates the database from the specified set of files.
    predict        Creates the samples and evaluates them.

Global Arguments:
  -h, --help       show this help message and exit
  -l, --locals     Display locals on error.

usage: wisp build [-h] [-p PARAMETERS] database_name input_folder

positional arguments:
  database_name         Name for database
  input_folder          Input folder containig reference genomes

options:
  -h, --help            show this help message and exit
  -p PARAMETERS, --parameters PARAMETERS
                        Specifies a parameter file

usage: wisp predict [-h] [-p PARAMETERS] database_name input_folder output_folder

positional arguments:
  database_name         Name for database
  input_folder          Input folder containig unknown genomes
  output_folder         Input folder containig reference genomes

options:
  -h, --help            show this help message and exit
  -p PARAMETERS, --parameters PARAMETERS
                        Specifies a parameter file