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ENH: notebook to calibrate regressor to flag HCPh T1w images for exclusion #470

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merged 6 commits into from
Apr 30, 2024

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celprov
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@celprov celprov commented Apr 29, 2024

enh: add code to extract ratings from mongo database to pandas dataframe
enh: add data necessary to train regressor
enh: render notebook under analysis
enh: add mriqc-learn as a requirement

celprov added 4 commits April 24, 2024 14:35
enh: train a regressor to predict QC rating from HCPh T1w manual ratings
enh: add IQMs and manual ratings under data
enh: add mriqc-learn as a requirement
fix: reduce number of parameters to cover in grid search
fix: remove randomstate assignement
@celprov celprov requested a review from oesteban April 29, 2024 10:24
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Can you add a cell at the beginning plotting the ratings you gave encoded with a color scale, in separate scatterplots with different IQMs? (this would be a bit like the group report, but coloring the samples with your rating.

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I've opened #474, and I'm merging this.

@celprov celprov merged commit d0c0a2e into TheAxonLab:mkdocs Apr 30, 2024
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2 participants