You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
The download_reads continer (used for get_accessions process to retrieve sample from SRA) can't be pulled as singularity container in github actions ci test - always giving the same weird error.
Already tried rebuilding and repushing the container, changing the base image, pushing to quay.io instead of docker, running only one ci in parallel - always same error.
We decided to omit this ci test for now, as locally everything is fine and docker version of the same test is working.
Solution
What is a possible solution to the problem?
Possible solutions: try to rebuild the container in a different way, push to yet another repo, use official sra-tools container as base image.
The text was updated successfully, but these errors were encountered:
Problem
The download_reads continer (used for get_accessions process to retrieve sample from SRA) can't be pulled as singularity container in github actions ci test - always giving the same weird error.

Already tried rebuilding and repushing the container, changing the base image, pushing to quay.io instead of docker, running only one ci in parallel - always same error.
PR where the issue originally was found:
#253
PR used for debugging the issue (not successful):
#254
Internet knows not much about this error. So far found only this:

https://bioinfo-guidelines.readthedocs.io/_/downloads/en/latest/pdf/
We decided to omit this ci test for now, as locally everything is fine and docker version of the same test is working.
Solution
What is a possible solution to the problem?
Possible solutions: try to rebuild the container in a different way, push to yet another repo, use official sra-tools container as base image.
The text was updated successfully, but these errors were encountered: