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CI test can't pull singularity image for download_reads container #262

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Vlad-Dembrovskyi opened this issue Sep 1, 2021 · 0 comments
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P1 Med priority: Important for pipeline completeness and good ux or refactors a code smell

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@Vlad-Dembrovskyi
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Problem

The download_reads continer (used for get_accessions process to retrieve sample from SRA) can't be pulled as singularity container in github actions ci test - always giving the same weird error.
Already tried rebuilding and repushing the container, changing the base image, pushing to quay.io instead of docker, running only one ci in parallel - always same error.
image

PR where the issue originally was found:
#253

PR used for debugging the issue (not successful):
#254

Internet knows not much about this error. So far found only this:
https://bioinfo-guidelines.readthedocs.io/_/downloads/en/latest/pdf/
image

We decided to omit this ci test for now, as locally everything is fine and docker version of the same test is working.

Solution

What is a possible solution to the problem?
Possible solutions: try to rebuild the container in a different way, push to yet another repo, use official sra-tools container as base image.

@Vlad-Dembrovskyi Vlad-Dembrovskyi added the P1 Med priority: Important for pipeline completeness and good ux or refactors a code smell label Sep 23, 2021
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Labels
P1 Med priority: Important for pipeline completeness and good ux or refactors a code smell
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