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31 Open 137 Closed
31 Open 137 Closed
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Issues list

/usr/bin/env: ‘python2’: No such file or directory
#342 opened Jan 24, 2023 by marina-yurieva
.command.sh: line 4: rmats.py: command not found
#341 opened Jan 19, 2023 by angarb
3
Singularity run fails with docker image alpine based [potential fix: switch to ubuntu based base layer]
#340 opened Jan 10, 2023 by cgpu
3 tasks
Separate the improvements from the rmats 2 process implementation (rmats2, memory and cpus)
#337 opened Dec 1, 2022 by cgpu
2 tasks
@imendes93
ImportError: /lib/x86_64-linux-gnu/libm.so.6: version `GLIBC_2.29' not found (required by /home/yuriem/.local/lib/python3.9/site-packages/pyBigWig.cpython-39-x86_64-linux-gnu.so)
#336 opened Nov 29, 2022 by imendes93
3
Documentation to enable end users to easily execute the pipeline
#328 opened Sep 29, 2022 by cgpu
3 tasks
1
Nextflow Update
#325 opened Sep 28, 2022 by angarb
1
Cleanup tags
#324 opened Sep 27, 2022 by angarb
@angarb
Update documentation to ensure local execution is described in detail
#321 opened Sep 8, 2022 by cgpu
1 task
1
Update human_test to work outside Sumner
#319 opened Aug 18, 2022 by ilevantis
Improve documentation for creating input files
#318 opened Aug 18, 2022 by ilevantis
Add Strandedness Function enhancement New feature or request feature:container P1 Med priority: Important for pipeline completeness and good ux or refactors a code smell
#314 opened May 25, 2022 by angarb
1
@imendes93
Fix Post Processing Output bug Something isn't working P1 Med priority: Important for pipeline completeness and good ux or refactors a code smell
#313 opened May 25, 2022 by angarb
1
Absorb changes from v1.0-fix-rmats-ram to new pipeline version P1 Med priority: Important for pipeline completeness and good ux or refactors a code smell
#311 opened Apr 22, 2022 by Vlad-Dembrovskyi
2 tasks
Fix pipeline reproducibility issue with rMATS P1 Med priority: Important for pipeline completeness and good ux or refactors a code smell
#310 opened Apr 22, 2022 by Vlad-Dembrovskyi
Add ci test nextflow run commands in the README file to be able to share the pipeline execution details
#308 opened Mar 3, 2022 by cgpu
Replace occurences of hardcoded directory under anczukow-lab P1 Med priority: Important for pipeline completeness and good ux or refactors a code smell
#307 opened Mar 3, 2022 by cgpu
Gen3-DRS files not found in manifest not being saved into a log file enhancement New feature or request
#306 opened Feb 9, 2022 by imendes93
Add an optional step to generate star index with pipeline P2 Low priority: Nice to have feature but does not affect completion of the analysis
#280 opened Sep 30, 2021 by Vlad-Dembrovskyi
3 tasks
test if sra config creation works on other machine for singularity
#277 opened Sep 30, 2021 by Vlad-Dembrovskyi
@Vlad-Dembrovskyi
Remove the non-dated multiqc from the results P2 Low priority: Nice to have feature but does not affect completion of the analysis
#272 opened Sep 23, 2021 by Vlad-Dembrovskyi
3 tasks
Add a CI tests to cover rMATS and the second half of the pipeline P1 Med priority: Important for pipeline completeness and good ux or refactors a code smell
#271 opened Sep 23, 2021 by Vlad-Dembrovskyi
3 tasks
Add a CI test that would cover paired_rMATS P1 Med priority: Important for pipeline completeness and good ux or refactors a code smell
#270 opened Sep 23, 2021 by Vlad-Dembrovskyi
3 tasks
Add documentation on paired_rMATS P1 Med priority: Important for pipeline completeness and good ux or refactors a code smell
#269 opened Sep 23, 2021 by Vlad-Dembrovskyi
@angarb
CI test can't pull singularity image for download_reads container P1 Med priority: Important for pipeline completeness and good ux or refactors a code smell
#262 opened Sep 1, 2021 by Vlad-Dembrovskyi
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