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Absorb changes from v1.0-fix-rmats-ram to new pipeline version #311

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Vlad-Dembrovskyi opened this issue Apr 22, 2022 · 0 comments
Open
2 tasks

Absorb changes from v1.0-fix-rmats-ram to new pipeline version #311

Vlad-Dembrovskyi opened this issue Apr 22, 2022 · 0 comments
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P1 Med priority: Important for pipeline completeness and good ux or refactors a code smell

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@Vlad-Dembrovskyi
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Absorb useful changes from
v1.0-fix-rmats-ram
to latest version of pipeline:

  • Parametrize cpus and memory for stringtie_merge and rmats processes
  • Add optional flexible machine type definition for rmats and strigtie_merge (commit)

This changes are needed in order to be able to run big jobs with rMATS that don't fit in default resources definition.
@Vlad-Dembrovskyi Vlad-Dembrovskyi added the P1 Med priority: Important for pipeline completeness and good ux or refactors a code smell label Apr 22, 2022
@ilevantis ilevantis mentioned this issue Jul 15, 2022
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@Vlad-Dembrovskyi