Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Replace occurences of hardcoded directory under anczukow-lab #307

Open
cgpu opened this issue Mar 3, 2022 · 0 comments
Open

Replace occurences of hardcoded directory under anczukow-lab #307

cgpu opened this issue Mar 3, 2022 · 0 comments
Labels
P1 Med priority: Important for pipeline completeness and good ux or refactors a code smell

Comments

@cgpu
Copy link
Contributor

cgpu commented Mar 3, 2022 •
edited by angarb
Loading

Problem

The directory is hard-coded in the sumner.config:

singularity {
  enabled = true
  cacheDir = "/projects/anczukow-lab/.singularity_cache/"
  autoMounts = true
}

and in some test files - including the human test.
@angarb angarb changed the title Replace occurencies of hardcoded directory under anczukow-lab; Update ci tests Replace occurencies of hardcoded directory under anczukow-lab May 25, 2022
@angarb angarb changed the title Replace occurencies of hardcoded directory under anczukow-lab Replace occurences of hardcoded directory under anczukow-lab May 25, 2022
@angarb angarb added the P1 Med priority: Important for pipeline completeness and good ux or refactors a code smell label May 25, 2022
@angarb angarb mentioned this issue Sep 28, 2022
Open
1 task
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
P1 Med priority: Important for pipeline completeness and good ux or refactors a code smell
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@cgpu @angarb