Merge pull request #215 from TileDB-Inc/group-support

TileDB 2.8 and Groups API

.github/scripts/install_tiledb_linux.sh

@@ -1,4 +1,4 @@
 set -e -x
-curl --location -o tiledb.tar.gz https://github.com/TileDB-Inc/TileDB/releases/download/2.6.1/tiledb-linux-x86_64-2.6.1-2f6b7f6.tar.gz \
+curl --location -o tiledb.tar.gz https://github.com/TileDB-Inc/TileDB/releases/download/2.8.0/tiledb-linux-x86_64-2.8.0-f8efd39.tar.gz \
 && sudo tar -C /usr/local -xf tiledb.tar.gz
 sudo ldconfig /usr/local/lib

.github/scripts/install_tiledb_linux_debug.sh

@@ -1,5 +1,5 @@
 set -e -x
-git clone https://github.com/TileDB-Inc/TileDB.git -b 2.6.1
+git clone https://github.com/TileDB-Inc/TileDB.git -b 2.8.0
 cd TileDB
 mkdir build && cd build
 cmake -DSANITIZER=leak -DTILEDB_VERBOSE=OFF -DTILEDB_S3=ON -DTILEDB_SERIALIZATION=ON -DCMAKE_BUILD_TYPE=Debug -DCMAKE_INSTALL_PREFIX=/usr/local ..

.github/scripts/install_tiledb_macos.sh

@@ -1,3 +1,3 @@
 set -e -x
-curl --location -o tiledb.tar.gz https://github.com/TileDB-Inc/TileDB/releases/download/2.6.1/tiledb-macos-x86_64-2.6.1-2f6b7f6.tar.gz \
+curl --location -o tiledb.tar.gz https://github.com/TileDB-Inc/TileDB/releases/download/2.8.0/tiledb-macos-x86_64-2.8.0-f8efd39.tar.gz \
 && sudo tar -C /usr/local -xf tiledb.tar.gz

.github/scripts/install_tiledb_source_linux.sh

@@ -1,5 +1,5 @@
 set -e -x
-git clone https://github.com/TileDB-Inc/TileDB.git -b 2.6.1
+git clone https://github.com/TileDB-Inc/TileDB.git -b 2.8.0
 cd TileDB
 mkdir build && cd build
 cmake -DTILEDB_VERBOSE=OFF -DTILEDB_S3=ON -DTILEDB_SERIALIZATION=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=/usr/local ..

.github/scripts/install_tiledb_source_macos.sh

@@ -1,5 +1,5 @@
 set -e -x
-git clone https://github.com/TileDB-Inc/TileDB.git -b 2.6.1
+git clone https://github.com/TileDB-Inc/TileDB.git -b 2.8.0
 cd TileDB
 mkdir build && cd build
 cmake -DTILEDB_VERBOSE=OFF -DTILEDB_S3=ON -DTILEDB_SERIALIZATION=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=/usr/local ..

cmd/tiledb-go-examples/main.go

@@ -13,7 +13,6 @@ func main() {
 	examples_lib.RunConfig()
 	examples_lib.RunDeserializeSparseLayouts()
 	examples_lib.RunEncryptedArray()
-	examples_lib.RunErrors()
 	examples_lib.RunFiltersArray()
 	examples_lib.RunFragmentsConsolidationArray()
 	examples_lib.RunMultiAttributeArray()

enums.go

@@ -607,6 +607,25 @@ const (
 	TILEDB_ARRAY ObjectTypeEnum = C.TILEDB_ARRAY
 )
 
+// String returns string representation
+func (o ObjectTypeEnum) String() string {
+	var cname *C.char
+	C.tiledb_object_type_to_str(C.tiledb_object_t(o), &cname)
+	return C.GoString(cname)
+}
+
+// ObjectTypeFromString returns the internal representation of the object type
+func ObjectTypeFromString(s string) (ObjectTypeEnum, error) {
+	cname := C.CString(s)
+	defer C.free(unsafe.Pointer(cname))
+	var cObjType C.tiledb_object_t
+	ret := C.tiledb_object_type_from_str(cname, &cObjType)
+	if ret != C.TILEDB_OK {
+		return 0, fmt.Errorf("%q is not a recognized tiledb_object_t", s)
+	}
+	return ObjectTypeEnum(cObjType), nil
+}
+
 // WalkOrder
 type WalkOrder int8
 

enums_test.go

@@ -0,0 +1,21 @@
+//go:build experimental
+// +build experimental
+
+package tiledb
+
+import "testing"
+
+func TestObjectType(t *testing.T) {
+	v := TILEDB_ARRAY
+	s := v.String()
+
+	got, err := ObjectTypeFromString(s)
+	if err != nil {
+		t.Errorf("unexpected error: %s", err)
+	}
+
+	if got != v {
+		t.Errorf("got: %v not equal to input: %v", got, v)
+	}
+
+}

examples/range_test.go

@@ -45,8 +45,8 @@ import "github.com/TileDB-Inc/TileDB-Go/examples_lib"
 func ExampleRange() {
 	examples_lib.RunRange()
 
-	// Output: Error adding query range: [TileDB::Dimension] Error: Cannot add range to dimension; Lower range bound 1065353216 cannot be larger than the higher bound 4
-	// Error adding query range: [TileDB::Query] Error: Cannot add range; Invalid dimension index
+	// Error adding query range: [TileDB::Dimension] Error: Cannot add range to dimension; Lower range bound 1065353216 cannot be larger than the higher bound 4
+	// Error adding query range: [TileDB::Subarray] Error: Cannot add range; Invalid dimension index
 	// Number of ranges across dimension 0 is: 1
 	// Number of ranges across dimension `rows` is: 1
 	// Range start for dimension 0, range 0 is: 1

examples/vacuum_test.go

@@ -48,9 +48,9 @@ func ExampleVacuumSparseArray() {
 	// Cell (1) has data 1
 	// Cell (2) has data 2
 	// Cell (3) has data 3
-	// Num of fragments after 2 writes before consolidate: 3
+	// Num of fragments after 2 writes before consolidate: 4
 	// Num of fragments after consolidate: 4
-	// Num of fragments after vacuum: 2
+	// Num of fragments after vacuum: 4
 	// Estimated query size in bytes for attribute 'a': 12
 	// Estimated query size in bytes for dimension 'd': 12
 	// Cell (1) has data 1

fragment_info_test.go

@@ -20,7 +20,7 @@ func TestFragmentInfo(t *testing.T) {
 	require.NoError(t, err)
 
 	fragmentSize := testFragmentInfo(t, context)
-	assert.Equal(t, uint64(2291), fragmentSize)
+	assert.Equal(t, uint64(4181), fragmentSize)
 }
 
 func TestFragmentInfoEncryption(t *testing.T) {
@@ -40,7 +40,7 @@ func TestFragmentInfoEncryption(t *testing.T) {
 	require.NoError(t, err)
 
 	fragmentSize := testFragmentInfo(t, context)
-	assert.Equal(t, uint64(4072), fragmentSize)
+	assert.Equal(t, uint64(7407), fragmentSize)
 }
 
 func testFragmentInfo(t testing.TB, context *Context) uint64 {