Resources for bioimage analysis, primarily focused around napari and neurodevelopment research.
- Bio-image Analysis Notebooks: A more in depth look into image analysis using python.
- Introduction to Bioimage analysis: The most general guide to biological images, describing the what, why, and how.
- Bio-image Analysis with Python: A course from intro to python to image processing to machine learning.
- pyclesperanto: accessible gpu-accelerated image analysis in python using pyopencl
- scikit-image: likely the most complete bio-image processing and analysis library in python
- dask and dask-image: distributed image processing
- simple-itk: n-dimensional cross language processing
- open-cv: image processing mostly focus on computer vision applications and not bioimages
- scikit-learn: machine learning in python