Make auto-running things less hidden, add runtime testing, small fixes to slicing #46

	name: Install, test and assess coverage

	on:
	pull_request:
	branches: [ main ]
	paths:
	- 'cogsworth/**'
	- 'setup.cfg'
	- 'setup.py'
	- 'pyproject.toml'
	workflow_dispatch:

	jobs:
	build:

	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: ['3.10', '3.11']

	steps:
	- uses: actions/checkout@v4
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install dependencies
	run: \|
	sudo apt-get update
	sudo apt-get install gsl-bin libgsl0-dev build-essential
	sudo apt-get install libhdf5-serial-dev
	python -m pip install --upgrade pip
	python -m pip install -e .[test]
	- name: Grab the data you need to test observables
	run: \|
	# prep the data needed for tests
	python cogsworth/tests/prep_data.py
	- name: Test package with pytest and generate coverage report
	run: \|
	# test with as many cores as possible for speed
	pytest cogsworth -n=auto --cov=./ --cov-report=xml
	- name: Get Coverage
	uses: orgoro/coverage@v3
	with:
	coverageFile: ./coverage.xml
	token: ${{ secrets.GITHUB_TOKEN }}

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