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White matter diffusion estimates in obsessive-compulsive disorder across 1,653 individuals: Machine learning findings from the ENIGMA OCD Working Group

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0_Shanghai_updated_v.21.11.13.R
0_Shanghai_updated_v.21.11.13.R
 
 
0_additional experiments.R
0_additional experiments.R
 
 
0_codebook.R
0_codebook.R
 
 
1_merge FA, MD, RD, AD within site_v.21.11.21.R
1_merge FA, MD, RD, AD within site_v.21.11.21.R
 
 
2.1_Data cleaning_v.21.11.22.R
2.1_Data cleaning_v.21.11.22.R
 
 
2.2._Make subset for each task_v.21.11.22.R
2.2._Make subset for each task_v.21.11.22.R
 
 
2_merge across site_v.21.11.21.R
2_merge across site_v.21.11.21.R
 
 
3_Adult, pediatric scaling before split_v.21.12.18.R
3_Adult, pediatric scaling before split_v.21.12.18.R
 
 
3_Adult_scaling_v.21.11.22.R
3_Adult_scaling_v.21.11.22.R
 
 
4_NeuroCombat_Dx_adult.R
4_NeuroCombat_Dx_adult.R
 
 
4_NeuroCombat_Dx_pediatric.R
4_NeuroCombat_Dx_pediatric.R
 
 
4_NeuroCombat_MedUnmed_adult.R
4_NeuroCombat_MedUnmed_adult.R
 
 
4_NeuroCombat_MedUnmed_pediatric.R
4_NeuroCombat_MedUnmed_pediatric.R
 
 
4_NeuroCombat_UnmedOCDHC_adult.R
4_NeuroCombat_UnmedOCDHC_adult.R
 
 
4_NeuroCombat_UnmedOCDHC_pediatric.R
4_NeuroCombat_UnmedOCDHC_pediatric.R
 
 
4_Performance_Val.pedi, Test.adult_LOSO.R
4_Performance_Val.pedi, Test.adult_LOSO.R
 
 
4_Performance_adult_dx_stratiCV.R
4_Performance_adult_dx_stratiCV.R
 
 
4_Performance_adult_dx_woB.R
4_Performance_adult_dx_woB.R
 
 
4_Performance_adult_med12_new_LOSO.R
4_Performance_adult_med12_new_LOSO.R
 
 
4_Performance_adult_medHC_LOSO.R
4_Performance_adult_medHC_LOSO.R
 
 
4_Performance_pedi_dx_stratiCV.R
4_Performance_pedi_dx_stratiCV.R
 
 
4_Performance_pedi_med12_new_LOSO.R
4_Performance_pedi_med12_new_LOSO.R
 
 
4_Performance_pedi_medHC_LOSO.R
4_Performance_pedi_medHC_LOSO.R
 
 
5-1_GLM_site effect on preds, performance_21.12.10.R
5-1_GLM_site effect on preds, performance_21.12.10.R
 
 
5-2.glm_adult_harmo(cov).R
5-2.glm_adult_harmo(cov).R
 
 
5-2.glm_adult_unharmo.R
5-2.glm_adult_unharmo.R
 
 
5-2.glm_pediatric_harmo(cov).R
5-2.glm_pediatric_harmo(cov).R
 
 
5-2.glm_pediatric_unharmo.R
5-2.glm_pediatric_unharmo.R
 
 
5-3. stepwise regression.R
5-3. stepwise regression.R
 
 
6.1.Visualization_pROC_22.02.09.R
6.1.Visualization_pROC_22.02.09.R
 
 
6.1_Visualization_pROC_22.02.09.R
6.1_Visualization_pROC_22.02.09.R
 
 
6.2_PCA_site_harmo.r
6.2_PCA_site_harmo.r
 
 
6.2_PCA_site_nonharmo.r
6.2_PCA_site_nonharmo.r
 
 
6.3.1_Visualization_violin plot for sample characteristics_adult_v.22.03.16.R
6.3.1_Visualization_violin plot for sample characteristics_adult_v.22.03.16.R
 
 
6.3.2_Visualization_violin plot for sample characteristics_pediatric_v.21.12.14.R
6.3.2_Visualization_violin plot for sample characteristics_pediatric_v.21.12.14.R
 
 
6.3.2_siteROC_dx_adult.R
6.3.2_siteROC_dx_adult.R
 
 
6.3.2_siteROC_dx_pediatric.R
6.3.2_siteROC_dx_pediatric.R
 
 
6.4_FI plot_adult.R
6.4_FI plot_adult.R
 
 
6.4_FI plot_pediatric.R
6.4_FI plot_pediatric.R
 
 
6.4_Trim feature importance plot_DAI_original_V.adult, T.pediatric.R
6.4_Trim feature importance plot_DAI_original_V.adult, T.pediatric.R
 
 
6.4_Trim feature importance plot_DAI_original_adult.R
6.4_Trim feature importance plot_DAI_original_adult.R
 
 
6.4_Trim feature importance plot_DAI_original_pediatric.R
6.4_Trim feature importance plot_DAI_original_pediatric.R
 
 
README.md
README.md
 
 

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ENIGMA-OCD

  • Author: Bogyeom Kim *, Gakyung Kim *, ENIGMA-OCD Consortium, Jiook Cha
  • Title: White matter diffusion estimates in obsessive-compulsive disorder across 1,653 individuals: Machine learning findings from the ENIGMA OCD Working Group

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White matter diffusion estimates in obsessive-compulsive disorder across 1,653 individuals: Machine learning findings from the ENIGMA OCD Working Group

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