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Make function to count circadian oscillators. #62

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Treblesteph opened this issue Feb 19, 2015 · 3 comments
Open

Make function to count circadian oscillators. #62

Treblesteph opened this issue Feb 19, 2015 · 3 comments
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@Treblesteph
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@Treblesteph Treblesteph self-assigned this Feb 19, 2015
@Treblesteph
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  • first need to run for an additional day or two under constant light
  • next need to find a way to analyse concentration timeseries to detect oscillators
  • could use an FTT-NLLS (some available online) and check for period between 20 - 28 hours or something
  • could do something more specific since system is very simple

@Treblesteph
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Paper that everyone cites when they say FFT-NLLS: http://jbr.sagepub.com/content/12/3/204.long

FFT in Julia: http://julia.readthedocs.org/en/latest/stdlib/math/?highlight=signal%20processing#signal-processing
FFT in C (called by Julia): http://www.fftw.org/

Treblesteph added a commit that referenced this issue Mar 26, 2015
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According to Mirela and Bruno, I should write a more simple version of FFT-NLLS for my system. First I need to determine what I am defining as a circadian rhythm.

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