CompatHelper: bump compat for ADTypes to 0.2, (keep existing compat) … #185
Annotations
8 errors and 1 warning
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Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/CJeWX/src/utilities/utilities.jl#L44
failed to run `@example` block in src/customized_layer.md:53-63
```@example afc
using Flux
function MLP_3layer(input_dim::Int, hdims::Int, output_dim::Int; activation=Flux.leakyrelu)
return Chain(
Flux.Dense(input_dim, hdims, activation),
Flux.Dense(hdims, hdims, activation),
Flux.Dense(hdims, output_dim),
)
end
```
exception =
ArgumentError: Package Flux not found in current path.
- Run `import Pkg; Pkg.add("Flux")` to install the Flux package.
Stacktrace:
[1] macro expansion
@ ./loading.jl:1772 [inlined]
[2] macro expansion
@ ./lock.jl:267 [inlined]
[3] __require(into::Module, mod::Symbol)
@ Base ./loading.jl:1753
[4] #invoke_in_world#3
@ ./essentials.jl:926 [inlined]
[5] invoke_in_world
@ ./essentials.jl:923 [inlined]
[6] require(into::Module, mod::Symbol)
@ Base ./loading.jl:1746
[7] eval
@ ./boot.jl:385 [inlined]
[8] #58
@ ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:754 [inlined]
[9] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[10] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:753
[11] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161
[12] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:515
[13] with_logger
@ ./logging.jl:627 [inlined]
[14] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer)
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158
[15] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:752
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Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/CJeWX/src/utilities/utilities.jl#L44
failed to run `@example` block in src/customized_layer.md:73-101
```@example afc
using Functors
using Bijectors
using Bijectors: partition, combine, PartitionMask
struct AffineCoupling <: Bijectors.Bijector
dim::Int
mask::Bijectors.PartitionMask
s::Flux.Chain
t::Flux.Chain
end
# to apply functions to the parameters that are contained in AffineCoupling.s and AffineCoupling.t,
# and to re-build the struct from the parameters, we use the functor interface of `Functors.jl`
# see https://fluxml.ai/Flux.jl/stable/models/functors/#Functors.functor
@functor AffineCoupling (s, t)
function AffineCoupling(
dim::Int, # dimension of input
hdims::Int, # dimension of hidden units for s and t
mask_idx::AbstractVector, # index of dimension that one wants to apply transformations on
)
cdims = length(mask_idx) # dimension of parts used to construct coupling law
s = MLP_3layer(cdims, hdims, cdims)
t = MLP_3layer(cdims, hdims, cdims)
mask = PartitionMask(dim, mask_idx)
return AffineCoupling(dim, mask, s, t)
end
```
exception =
ArgumentError: Package Functors not found in current path.
- Run `import Pkg; Pkg.add("Functors")` to install the Functors package.
Stacktrace:
[1] macro expansion
@ ./loading.jl:1772 [inlined]
[2] macro expansion
@ ./lock.jl:267 [inlined]
[3] __require(into::Module, mod::Symbol)
@ Base ./loading.jl:1753
[4] #invoke_in_world#3
@ ./essentials.jl:926 [inlined]
[5] invoke_in_world
@ ./essentials.jl:923 [inlined]
[6] require(into::Module, mod::Symbol)
@ Base ./loading.jl:1746
[7] eval
@ ./boot.jl:385 [inlined]
[8] #58
@ ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:754 [inlined]
[9] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[10] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:753
[11] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161
[12] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:515
[13] with_logger
@ ./logging.jl:627 [inlined]
[14] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer)
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158
[15] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:752
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Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/CJeWX/src/utilities/utilities.jl#L44
failed to run `@example` block in src/customized_layer.md:108-124
```@example afc
function Bijectors.transform(af::AffineCoupling, x::AbstractVector)
# partition vector using 'af.mask::PartitionMask`
x₁, x₂, x₃ = partition(af.mask, x)
y₁ = x₁ .* af.s(x₂) .+ af.t(x₂)
return combine(af.mask, y₁, x₂, x₃)
end
function Bijectors.transform(iaf::Inverse{<:AffineCoupling}, y::AbstractVector)
af = iaf.orig
# partition vector using `af.mask::PartitionMask`
y_1, y_2, y_3 = partition(af.mask, y)
# inverse transformation
x_1 = (y_1 .- af.t(y_2)) ./ af.s(y_2)
return combine(af.mask, x_1, y_2, y_3)
end
```
exception =
UndefVarError: `Bijectors` not defined
Stacktrace:
[1] top-level scope
@ customized_layer.md:109
[2] eval
@ ./boot.jl:385 [inlined]
[3] #58
@ ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:754 [inlined]
[4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:753
[6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161
[7] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:515
[8] with_logger
@ ./logging.jl:627 [inlined]
[9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer)
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:752
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|
Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/CJeWX/src/utilities/utilities.jl#L44
failed to run `@example` block in src/customized_layer.md:129-148
```@example afc
function Bijectors.with_logabsdet_jacobian(af::AffineCoupling, x::AbstractVector)
x_1, x_2, x_3 = Bijectors.partition(af.mask, x)
y_1 = af.s(x_2) .* x_1 .+ af.t(x_2)
logjac = sum(log ∘ abs, af.s(x_2))
return combine(af.mask, y_1, x_2, x_3), logjac
end
function Bijectors.with_logabsdet_jacobian(
iaf::Inverse{<:AffineCoupling}, y::AbstractVector
)
af = iaf.orig
# partition vector using `af.mask::PartitionMask`
y_1, y_2, y_3 = partition(af.mask, y)
# inverse transformation
x_1 = (y_1 .- af.t(y_2)) ./ af.s(y_2)
logjac = -sum(log ∘ abs, af.s(y_2))
return combine(af.mask, x_1, y_2, y_3), logjac
end
```
exception =
UndefVarError: `Bijectors` not defined
Stacktrace:
[1] top-level scope
@ customized_layer.md:130
[2] eval
@ ./boot.jl:385 [inlined]
[3] #58
@ ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:754 [inlined]
[4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:753
[6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161
[7] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:515
[8] with_logger
@ ./logging.jl:627 [inlined]
[9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer)
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:752
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|
Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/CJeWX/src/utilities/utilities.jl#L44
failed to run `@example` block in src/customized_layer.md:154-167
```@example afc
using Random, Distributions, LinearAlgebra
dim = 4
hdims = 10
Ls = [
AffineCoupling(dim, hdims, 1:2),
AffineCoupling(dim, hdims, 3:4),
AffineCoupling(dim, hdims, 1:2),
AffineCoupling(dim, hdims, 3:4),
]
ts = reduce(∘, Ls)
q₀ = MvNormal(zeros(Float32, dim), I)
flow = Bijectors.transformed(q₀, ts)
```
exception =
ArgumentError: Package Distributions not found in current path.
- Run `import Pkg; Pkg.add("Distributions")` to install the Distributions package.
Stacktrace:
[1] macro expansion
@ ./loading.jl:1772 [inlined]
[2] macro expansion
@ ./lock.jl:267 [inlined]
[3] __require(into::Module, mod::Symbol)
@ Base ./loading.jl:1753
[4] #invoke_in_world#3
@ ./essentials.jl:926 [inlined]
[5] invoke_in_world
@ ./essentials.jl:923 [inlined]
[6] require(into::Module, mod::Symbol)
@ Base ./loading.jl:1746
[7] eval
@ ./boot.jl:385 [inlined]
[8] #58
@ ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:754 [inlined]
[9] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[10] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:753
[11] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161
[12] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:515
[13] with_logger
@ ./logging.jl:627 [inlined]
[14] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer)
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158
[15] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:752
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Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/CJeWX/src/utilities/utilities.jl#L44
failed to run `@example` block in src/customized_layer.md:169-171
```@example afc
x = rand(flow, 10)
```
exception =
UndefVarError: `flow` not defined
Stacktrace:
[1] top-level scope
@ customized_layer.md:170
[2] eval
@ ./boot.jl:385 [inlined]
[3] #58
@ ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:754 [inlined]
[4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:753
[6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161
[7] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:515
[8] with_logger
@ ./logging.jl:627 [inlined]
[9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer)
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:752
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|
Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/CJeWX/src/utilities/utilities.jl#L44
failed to run `@example` block in src/customized_layer.md:173-175
```@example afc
logpdf(flow, x[:,1])
```
exception =
UndefVarError: `flow` not defined
Stacktrace:
[1] top-level scope
@ customized_layer.md:174
[2] eval
@ ./boot.jl:385 [inlined]
[3] #58
@ ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:754 [inlined]
[4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:753
[6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161
[7] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:515
[8] with_logger
@ ./logging.jl:627 [inlined]
[9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer)
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:752
|
|
Run julia-actions/julia-docdeploy@v1
Process completed with exit code 1.
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Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, julia-actions/setup-julia@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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