Updated feat/ca3net readme with usage advice #37
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progress toward bug fix with CSTP copyampasyni function is successfully compiling in snn_cpu_module.cpp copyampasyni function is successfully also compiling in snn_gpu_module.cpp memcpy may be working runtimeDataGPU.AMPA_syn_i is now reading and writing values runtimeDataGPU.AMPA_syn_i is now persistantly storing values throughout the sim ampa current appear to successfully compute with new approach using GPU parallelization progress toward all currents working with new method all currents successfully working with new method progress with getting all synapse processed with new nethod auto sizing of syn_i arrays seems to work better auto sizing of syn_i arrays might be fully working now added ca3cstp_taud unit test ca3cstp_taud unit test corrected possibly synapse id issue is fixed with synId now being used cleaned up extra code code further tidied up fixed synId = 0 positions added synId counter reset function added synId counter reset function updated STP calc fixed kernel_STPInit() bug attempted fix of synId for STP calcs cleaned up new code additions work in progress of cstp bug fix work in progress of cstp bug fix work in progress with cstp bug fix work in progress with cstp bug fix candidate CSTP bug fix that works successfully candidate CSTP bug fix that works successfully candidate CSTP bug fix that works successfully potentially fixed tau_d indexing updated synaptic spike adding current renamed variables syn_i to syn_g because that fits their basis equations better work-in-progress on higher performance and capacity version of the CSTP patch work-in-progress on higher performance and capacity version of the CSTP patch potential higher capacity version working now progress toward high-capacity cstp fix working higher capacity cstp fix version now potentially fully working possibly fully working high-capacity cstp patch version. however more testing including watching for race conditions should be done. changed print flags fixed nmda decay removed some atomicadd operations because they appear unneeded and take longer to compute removed some atomicadd operations because they appear unneeded and take longer to compute removed some no longer used functions and variables removed some no longer used functions and variables condensed some operations code revision that appear to cause a significant speed increase code revision that appear to cause a significant speed increase code revision that appear to cause a significant speed increase reduced the number of computations in the synapse decay code added some recoding to make synapse calc less operations and more clear fixed atomicadd operations fixed atomicadd operations reduced nmda calcs in conductanceUpdate() in synapse conductance pitched memory, post is now row index and pre is column index in 2D array, instead of the other way around. This makes more intuitive sense. fixed cudaMallocPitch memory allocation Combined commits to CSTP bug fix code into one commit
…onductance decay. The default is to use doubles. Doubles uses some more GPU RAM but is a bit more accurate.
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Hi @larsnm, just checking in here - approving this readme file update to the hippocampome branch would be appreciated. I am having to direct users to my forked readme for info until this is updated. I'd like to get this accepted to help people using such code related to my recently published simulation journal article. |
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A new readme section "use of this branch" is added. This provides a summary of instructions and issue info. for anyone who uses this branch. Both @nmsutton and @jkopsick approve of this pull request being applied to the feat/ca3net branch on the main CARLsim6 repo.