fix GHA workflow #5
Workflow file for this run
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| name: Build and ctest and recon_test_pack CI | |
| on: | |
| push: | |
| branches: | |
| - master | |
| paths-ignore: | |
| - 'appveyor.yml' | |
| - 'azure-pipelines.yml' | |
| - 'CITATION.cff' | |
| - '**/*.md' | |
| - '**/*.html' | |
| - '**/*.htm' | |
| - '**/*.tex' | |
| pull_request: | |
| branches: | |
| - master | |
| paths-ignore: | |
| - 'appveyor.yml' | |
| - 'azure-pipelines.yml' | |
| - 'CITATION.cff' | |
| - '**/*.md' | |
| - '**/*.html' | |
| - '**/*.htm' | |
| - '**/*.tex' | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| include: | |
| - os: ubuntu-latest | |
| compiler: gcc | |
| compiler_version: 9 | |
| BUILD_TYPE: "Release" | |
| - os: ubuntu-latest | |
| compiler: gcc | |
| compiler_version: 9 | |
| BUILD_TYPE: "Debug" | |
| - os: ubuntu-latest | |
| compiler: gcc | |
| compiler_version: 12 | |
| BUILD_TYPE: "Release" | |
| - os: ubuntu-latest | |
| compiler: clang | |
| BUILD_TYPE: "Release" | |
| # let's run all of them, as opposed to aborting when one fails | |
| fail-fast: false | |
| name: ${{ matrix.os }}-${{ matrix.compiler }}${{ matrix.compiler_version }}-${{ matrix.BUILD_TYPE }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - name: set_compiler_variables | |
| shell: bash | |
| run: | | |
| set -ex | |
| if test 'XX${{ matrix.compiler }}' = 'XXclang'; then | |
| CC="clang" | |
| CXX="clang++" | |
| elif test 'XX${{ matrix.compiler }}' = 'XXgcc'; then | |
| CC="gcc" | |
| CXX="g++" | |
| fi | |
| if test 'XX${{ matrix.compiler_version }}' != 'XX'; then | |
| CC=${CC}-${{ matrix.compiler_version }} | |
| CXX=${CXX}-${{ matrix.compiler_version }} | |
| fi | |
| if test 'XX${{ matrix.os }}' = 'XXmacOS-latest'; then | |
| if test 'XX${{ matrix.compiler }}' = 'XXclang'; then | |
| brew install llvm@${{ matrix.compiler_version }} | |
| if test XX${HOMEBREW_PREFIX} = XX; then | |
| HOMEBREW_PREFIX=/usr/local | |
| fi | |
| LDFLAGS="-L$HOMEBREW_PREFIX/opt/llvm/lib/c++ -Wl,-rpath,$HOMEBREW_PREFIX/opt/llvm/lib/c++" | |
| # make available to jobs below | |
| echo LDFLAGS="$LDFLAGS" >> $GITHUB_ENV | |
| CC="$HOMEBREW_PREFIX/opt/llvm/bin/clang" | |
| CXX="$HOMEBREW_PREFIX/opt/llvm/bin/clang++" | |
| fi | |
| fi | |
| export CC CXX | |
| # make available to jobs below | |
| echo CC="$CC" >> $GITHUB_ENV | |
| echo CXX="$CXX" >> $GITHUB_ENV | |
| - name: install_dependencies | |
| shell: bash | |
| run: | | |
| set -ex | |
| # We will install some external dependencies here | |
| CMAKE_INSTALL_PREFIX=${GITHUB_WORKSPACE}/install | |
| case ${{matrix.os}} in | |
| (ubuntu*) | |
| sudo apt update | |
| # install compiler | |
| if test 'XX${{ matrix.compiler }}' = 'XXclang'; then | |
| # package is called clang, need libomp-dev for OpenMP support | |
| sudo apt install $CC libomp-dev | |
| else | |
| sudo apt install $CXX | |
| fi | |
| # other dependencies | |
| # note: v5 is distributed without the REVIEW module | |
| sudo apt install libinsighttoolkit4-dev | |
| ;; | |
| (macOS*) | |
| brew install itk | |
| ;; | |
| esac | |
| echo PYTHON_EXECUTABLE="$PYTHON_EXECUTABLE" >> $GITHUB_ENV | |
| - name: ccache | |
| uses: hendrikmuhs/ccache-action@v1 | |
| with: | |
| key: ${{ matrix.os }}-${{ matrix.compiler }}${{ matrix.compiler_version }}-${{ matrix.BUILD_TYPE }} | |
| - name: configure | |
| shell: bash | |
| env: | |
| BUILD_TYPE: ${{ matrix.BUILD_TYPE }} | |
| BUILD_FLAGS: ${{ matrix.BUILD_FLAGS }} | |
| run: | | |
| set -ex | |
| cmake --version | |
| if test "XX$CC" != "XX"; then | |
| $CC --version | |
| $CXX --version | |
| fi | |
| CMAKE_INSTALL_PREFIX=${GITHUB_WORKSPACE}/install | |
| # make available to jobs below | |
| echo CMAKE_INSTALL_PREFIX="$CMAKE_INSTALL_PREFIX" >> $GITHUB_ENV | |
| EXTRA_BUILD_FLAGS="-DCMAKE_INSTALL_PREFIX=${CMAKE_INSTALL_PREFIX} -DCMAKE_BUILD_TYPE=${BUILD_TYPE}" | |
| echo "cmake flags $BUILD_FLAGS $EXTRA_BUILD_FLAGS" | |
| mkdir build | |
| cd build | |
| cmake -S .. ${BUILD_FLAGS} ${EXTRA_BUILD_FLAGS} | |
| - name: build | |
| shell: bash | |
| env: | |
| BUILD_TYPE: ${{ matrix.BUILD_TYPE }} | |
| run: | | |
| cd ${GITHUB_WORKSPACE}/build; | |
| cmake --build . -j 2 --config ${BUILD_TYPE}} --target install | |
| - name: ctest | |
| shell: bash | |
| env: | |
| BUILD_TYPE: ${{ matrix.BUILD_TYPE }} | |
| run: | | |
| set -vx | |
| cd ${GITHUB_WORKSPACE}/build | |
| ctest --output-on-failure -C ${BUILD_TYPE} | |
| - name: Upload ctest log files for debugging | |
| uses: actions/upload-artifact@v4 | |
| if: failure() | |
| with: | |
| name: ctest_log_files-${{ matrix.os }}-${{ matrix.compiler }}${{ matrix.compiler_version }}-${{ matrix.BUILD_TYPE }} | |
| path: | | |
| ${{ github.workspace }}/build/**/*.log | |
| retention-days: 7 | |
| - name: CPack | |
| shell: bash | |
| env: | |
| BUILD_TYPE: ${{ matrix.BUILD_TYPE }} | |
| run: | | |
| set -vx | |
| cd ${GITHUB_WORKSPACE}/build | |
| cpack | |
| # outputs PETPVC-1.*.*.sh, .tar.gz and .tar.Z |