BioImage Analysis Repeatability exercise

Goal

open FIJI blobs image
manualy count blobs
count blobs using manual threshold and analyze particles (!!! this is not good practice!!!)
count blobs using script with automatic otsu threshold and analyze particles (not counting blobs on edges)

Downloads

You can find results in evaluation.

Name		Name	Last commit message	Last commit date
Latest commit History 35 Commits
README.md		README.md
blob_count.ijm		blob_count.ijm
comparison_plot.png		comparison_plot.png
counting_table.csv		counting_table.csv
evaluation.ipynb		evaluation.ipynb
requirements.txt		requirements.txt