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@UMCUGenetics

UMCU Genetics

Repository for genetics code

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  1. RNASeq-NF RNASeq-NF Public

    RNASeq-NF is an NGS analysis pipeline for RNA expression quantification.

    Nextflow 7 8

  2. NF-IAP NF-IAP Public

    Illumina Analysis Pipeline in Nextflow

    Nextflow 2 5

  3. NextflowModules NextflowModules Public

    UMCU Genetics Nextflow modules

    Nextflow 26 10

Repositories

Showing 10 of 144 repositories
  • GIABEval Public

    Genome-in-a-bottle evaluation tool to determine statistics

    UMCUGenetics/GIABEval’s past year of commit activity
    0 MIT 0 0 1 Updated Oct 16, 2024
  • Dx_resources Public

    Resources used in diagnostics pipelines

    UMCUGenetics/Dx_resources’s past year of commit activity
    Python 3 MIT 0 15 1 Updated Oct 15, 2024
  • DIMS Public

    Direct Infusion Mass Spectrometry pipeline

    UMCUGenetics/DIMS’s past year of commit activity
    R 2 MIT 2 11 0 Updated Oct 14, 2024
  • CustomModules Public
    UMCUGenetics/CustomModules’s past year of commit activity
    R 1 MIT 0 0 6 Updated Oct 14, 2024
  • ExonCov Public

    ExonCov: Exon coverage statistics from BAM files

    UMCUGenetics/ExonCov’s past year of commit activity
    Python 4 MIT 3 4 3 Updated Oct 14, 2024
  • clarity_epp Public

    Clarity LIMS epp scripts

    UMCUGenetics/clarity_epp’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Oct 11, 2024
  • Dx_tracks Public
    UMCUGenetics/Dx_tracks’s past year of commit activity
    Verilog 2 0 1 0 Updated Oct 4, 2024
  • Epi2Me_wf-human-variation Public Forked from epi2me-labs/wf-human-variation
    UMCUGenetics/Epi2Me_wf-human-variation’s past year of commit activity
    Nextflow 0 43 0 1 Updated Oct 4, 2024
  • DxNextflowWES Public

    Genome Diagnostics Nextflow WES workflow

    UMCUGenetics/DxNextflowWES’s past year of commit activity
    Nextflow 6 MIT 1 6 1 Updated Sep 25, 2024
  • rnaseq-voila Public Forked from KlinGenErasmusMC/rnaseq-voila

    Jupyter Notebook / Voila App for analysis and filtering of RNA-Seq data for clinical genetics diagnostics

    UMCUGenetics/rnaseq-voila’s past year of commit activity
    Jupyter Notebook 0 MIT 2 0 0 Updated Sep 4, 2024
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