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CustomModules

UMCU Genetics Custom Modules - Genome Diagnostics.

This repository contains custom nextflow processes and their dependent/linked files (scripts, dockerfiles etc.) used as submodule in our NGS workflows.

Set up folder structure

Utils

Utility functions are dinstinguished and can be found in Utils.

Designated folder

When nextflow processes or their dependent files are linked to another git repository, the files will be placed in a designated folder. For example: ClarityEpp folder and https://github.com/UMCUGenetics/clarity_epp

If a set of files is not per se a utility and doesnot have a separate repository, it is allowed to create a designated folder as well.

Docker files

Build docker image for software dependencies.

  • Install Docker Desktop 
    docker build -t organization_or_username/toolname:version -f path_to_dockerfile
docker push organization_or_username/toolname:version
  • If changes are required to the dockerfile, manually update label version.