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I tried to use sample_qc with only specifying a sample and not a panel.
branch develop
python ExonCov.py sample_qc -s 141
Expected behaviour
Message from argument parser, not all required parameters provided.
Observed behaviour
TypeError.
Traceback (most recent call last):
File "ExonCov.py", line 29, in <module>
manager.run()
File "/hpc/diaggen/software/development/ExonCov/venv/lib/python2.7/site-packages/flask_script/__init__.py", line 417, in run
result = self.handle(argv[0], argv[1:])
File "/hpc/diaggen/software/development/ExonCov/venv/lib/python2.7/site-packages/flask_script/__init__.py", line 386, in handle
res = handle(*args, **config)
File "/hpc/diaggen/software/development/ExonCov/venv/lib/python2.7/site-packages/flask_script/commands.py", line 216, in __call__
return self.run(*args, **kwargs)
File "/hpc/diaggen/software/development/ExonCov/ExonCov/cli.py", line 349, in run
if len(samples) != len(panels):
TypeError: <ExonCov.cli.SampleQC object at 0x2ae89c546650>: object of type 'NoneType' has no len()
The text was updated successfully, but these errors were encountered:
I tried to use sample_qc with only specifying a sample and not a panel.
branch develop
python ExonCov.py sample_qc -s 141
Expected behaviour
Message from argument parser, not all required parameters provided.
Observed behaviour
TypeError.
The text was updated successfully, but these errors were encountered: