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@USDA-ARS-GBRU

USDA-ARS Genomics and Bioinformatics Research Unit

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  1. itsxpress itsxpress Public

    Software to trim the ITS region of FASTQ sequences for amplicon sequencing analysis

    Python 8 8

  2. GuideMaker GuideMaker Public

    GuideMaker: Software to design CRISPR-Cas guide RNA pools in non-model genomes

    Python 6 3

  3. micrompn micrompn Public

    MicroMPN: A Python command line program for automating most probable number (MPN) estimates in microtiter plates

    Python 1

  4. PanPipes PanPipes Public

    Test sets and pipeline scripts for pan-genomic graph analysis

    Python 15 2

  5. branchwater-web branchwater-web Public

    web app for search of SRA with Mastiff

    HTML 2

Repositories

Showing 10 of 69 repositories
  • seed-microbiome-traits Public
    USDA-ARS-GBRU/seed-microbiome-traits’s past year of commit activity
    R 0 0 0 0 Updated Aug 19, 2024
  • SugarcaneCrossingTool Public
    USDA-ARS-GBRU/SugarcaneCrossingTool’s past year of commit activity
    R 0 0 4 0 Updated Aug 15, 2024
  • ITS_HMMs Public

    This is a versioned data collection containing a collection of HMMER models to identify the ends of ITS sequences.

    USDA-ARS-GBRU/ITS_HMMs’s past year of commit activity
    0 0 0 0 Updated Aug 9, 2024
  • GuideMaker Public

    GuideMaker: Software to design CRISPR-Cas guide RNA pools in non-model genomes

    USDA-ARS-GBRU/GuideMaker’s past year of commit activity
    Python 6 3 1 6 Updated Jul 9, 2024
  • PanPipes Public

    Test sets and pipeline scripts for pan-genomic graph analysis

    USDA-ARS-GBRU/PanPipes’s past year of commit activity
    Python 15 2 0 0 Updated Jun 20, 2024
  • GEERU_workshop Public

    thoe 2024 GEERU/MSU scoping workshop in Starkville, MS

    USDA-ARS-GBRU/GEERU_workshop’s past year of commit activity
    2 0 0 0 Updated May 22, 2024
  • crossword Public
    USDA-ARS-GBRU/crossword’s past year of commit activity
    R 2 2 1 0 Updated May 20, 2024
  • DigitalPhenotyping Public
    USDA-ARS-GBRU/DigitalPhenotyping’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated May 7, 2024
  • FruitQuality Public
    USDA-ARS-GBRU/FruitQuality’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated May 3, 2024
  • itsxpress Public

    Software to trim the ITS region of FASTQ sequences for amplicon sequencing analysis

    USDA-ARS-GBRU/itsxpress’s past year of commit activity
    Python 8 8 5 0 Updated Apr 22, 2024
View all repositories

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