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Pull request #51: HTTK-225 Merge Dev into Main v2.3.1
Merge in HTTK/httk-dev from dev to main * commit '68c6fa56e1d6f9589b67706c3d0a70a5d0e1b87c': (42 commits) Updated CCD tables Updating tests Change unit test for Mac M1 compliance Change unit test for Mac M1 compliance Plasma not blood (HTTK-217) added method and mf arguments to the unit test for solve_gas_pbtk which was missed last round, updated documentation with transparency about the OS precision diffs, updated documentation with roxygen2::roxygenize('~/Git/httk-dev/httk/') Update package help to roxygen default Fixes to state equal all and passes ascran Fixes to state equal all and passes ascran update documentation with roxygen2::roxygenise('~/Git/httk-dev/httk') (HTTK-215 & HTTK-219) make sure the default options provided in the documentation match those in 'get_fabsgut', only thing to change was Caco2.Pab.default from 2 to 1.6 update documentation with roxygen2::roxygenise('~/Git/httk-dev/httk') (HTTK-215 & HTTK-219) Resolve issue with Caco2.options, needed to update documentation with correct argument option for Caco2.options (i.e. Caco2.Pab.default not Caco2.default) HTTK-208: Stopped rounding times in solve_model.R. Quickest fix to time precision problem. (HTTK-217) update the solve_gas_test R script for the pyrene cases with additional arguments to make results consistent across OS's with various different precisions - method = 'losde' and mf = 10 Passed CRAN checks except for convert_units Changed stop to warning (HTTK-218) update 'scale_dosing' to be able to accept the 'state' argument now necessary for 'convert_units' & update 'solve_model' to pass the relevant compound state information for relevant compartments - all before data input passed to ODE solver Cleaned up dosing parameters Updated news ...
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