235 247 248 206 api plotting and bug fixes

[cthunes]

Closes #235. API plotting is now functional. Use ccdR dev branch to test out API plotting.
Closes #247. The obscure well types are now printed out properly
Closes #248. Added check whether "mc" or "sc"
Closes #206. Improved logic for single conc coff direction in both plotly and ggplot, more consistent and coff flipped for -1 hitcalls. However, to my knowledge there will be no way to print the coff in the correct direction unless we know which overwrite method was assigned.

[madison-feshuk]

Got the following error trying to plot via API for m4id == '1255004'

tcplPlot(type="mc", fld="m4id", val=unique(dat$m4id), output='console')
Error in mutate():
ℹ In argument: flag = ifelse(is.na(flag) || flag == "NULL", "None", paste(flag, collapse = ";\n")).
ℹ In row 1.
Caused by error in is.na(flag) || flag == "NULL":
! 'length = 2' in coercion to 'logical(1)'
Backtrace:

1. tcpl::tcplPlot(...)
2. base::ifelse(...)

[madison-feshuk]

API plotting seems to be working great, but getting the following warnings. May be something to suppress in the future re: #254

tcplPlot(type="mc", fld="m4id", val=c('749888','749006','749012','749024'), verbose=TRUE, output='pdf', yuniform = TRUE, flags=TRUE)

Warning: Removed 5 rows containing missing values (geom_function()).Warning: Removed 10 rows containing missing values (geom_function()).Warning: Removed 32 rows containing missing values (geom_segment()).Warning: Removed 32 rows containing missing values (geom_segment()).Warning: Removed 16 rows containing missing values (geom_segment()).Warning: Removed 16 rows containing missing values (geom_segment()).Warning: Removed 16 rows containing missing values (geom_segment()).Warning: Removed 16 rows containing missing values (geom_segment()).Warning: Removed 16 rows containing missing values (geom_segment()).Warning: Removed 16 rows containing missing values (geom_segment()).

This branch also resolves "Error in data$dsstox_substance_id <- paste0("Well type: ", wllt) :
object of type 'closure' is not subsettable" error

[madison-feshuk]

Change worked with updated dev branch of ccdR