Fill in documentation (#12)

Updating documentation by removing aieng_template text and adding text from the README and project proposal.

docs/source/index.md

@@ -12,57 +12,20 @@ api
 
 ```
 
-# TODO: modify this when working on updating documentation
-
-This template repository can be used to bootstrap AI Engineering project repositories
-on Github! The template is meant for python codebases since Python is the most commonly
-used language by our team.
-
-The template includes:
-
-- [pyproject.toml](https://pip.pypa.io/en/stable/reference/build-system/pyproject-toml/)
-file to specify repository information and manage dependencies using
-[Poetry](https://python-poetry.org/).
-
-- [README.md](https://docs.github.com/en/repositories/managing-your-repositorys-settings-and-features/customizing-your-repository/about-readmes) which should have basic information on why the project is
-useful, installation instructions and other information on how users can get started.
-
-- [.pre-commit-config.yaml](https://pre-commit.com/) for running pre-commit hooks that
-check for code-style, apply formatting, check for type hints and run tests.
-
-- [.github/pull_request_template.md](https://docs.github.com/en/communities/using-templates-to-encourage-useful-issues-and-pull-requests/creating-a-pull-request-template-for-your-repository) for PRs.
-
-- [.github/ISSUE_TEMPLATE](https://docs.github.com/en/communities/using-templates-to-encourage-useful-issues-and-pull-requests/configuring-issue-templates-for-your-repository) for bug reports and issues that can be raised on the repository.
-
-- [.github/workflows](https://docs.github.com/en/actions/using-workflows) for running CI
-workflows using Github actions. The template includes CI workflows for code checks,
-documentation building and releasing python packages to PyPI.
-
-- [LICENSE.md](https://docs.github.com/en/repositories/managing-your-repositorys-settings-and-features/customizing-your-repository/licensing-a-repository) for adding a license to the project repository.
-By default, this is the [Apache-2.0 license](http://www.apache.org/licenses/). Please
-change according to your project!
-
-- [docs](https://pradyunsg.me/furo/) for adding project documentation. Typically
-projects should have API reference documentation, user guides and tutorials.
-
-- [CONTRIBUTING.md](https://docs.github.com/en/communities/setting-up-your-project-for-healthy-contributions/setting-guidelines-for-repository-contributors) with basic guidelines on how others can
-contribute to the repository.
-
-- [CODE_OF_CONDUCT.md](https://docs.github.com/en/communities/setting-up-your-project-for-healthy-contributions/adding-a-code-of-conduct-to-your-project) with standards on how the community engages in
-a healthy and constructive manner.
-
-- [.gitignore](https://docs.github.com/en/get-started/getting-started-with-git/ignoring-files)
-with some standard file extensions to be ignored by git. Please add/modify as necessary.
-
-- [codecov.yml](https://docs.codecov.com/docs/codecov-yaml) for using codecov.io to
-generate code coverage information for your repository. You would need to add codecov.io
-app as an [integration to your repository](https://docs.codecov.com/docs/how-to-create-a-github-app-for-codecov-enterprise).
-
-
-If you are starting a new project, you can navigate to the [Use this template](https://docs.github.com/en/repositories/creating-and-managing-repositories/creating-a-repository-from-a-template) button
-on the top right corner of the [template repository home page](https://github.com/VectorInstitute/FLorist)
-which will allow you to bootstrap your project repo using this template.
-
-Please check out the user guide page for more detailed information on using the
-template features. For exisiting projects, the [user guide](user_guide.md)
-can be followed to migrate to following the template more closely.
+FLorist is a platform to launch and monitor Federated Learning (FL) training jobs. Its goal is
+to bridge the gap between state-of-the-art FL algorithm implementations and their applications
+by providing a system to easily kick off, orchestrate, manage, collect, and summarize the results
+of [FL4Health](https://github.com/VectorInstitute/FL4Health) training jobs.
+
+As Federated Learning has a client and a server side, FLorist also has client and server-side
+“modes” to orchestrate the training process on both sides. FLorist will have long-running
+processes on the clients, which will be waiting for instructions from the FLorist server to
+start training. Once the FL server is started, FLorist will monitor both server and client
+processes as well as its own FL server process while collecting their progress to be displayed
+in a web UI for monitoring.
+
+At the end of training, it will save the results in a database and also provide access to the
+training artifacts (e.g. model files). For a visual representation of the system, please check
+the diagram below.
+
+![system_diagram.png](system_diagram.png)

docs/source/user_guide.md

@@ -2,61 +2,104 @@
 
 # User Guide
 
-# TODO: modify this when working on updating documentation
+## Setting up
 
-## pyproject.toml file and dependency management
+### Install dependencies
 
-If your project doesn't have a pyproject.toml file, simply copy the one from the
-template and update file according to your project.
+To install the project dependencies, first you need to create a virtual environment.
+The easiest way is by using the [virtualenv](https://pypi.org/project/virtualenv/) package:
 
-For managing dependencies, [Poetry](https://python-poetry.org/) is the recommended tool
-for our team. Hence, install Poetry to setup the development virtual environment. Poetry
-supports [optional dependency groups](https://python-poetry.org/docs/managing-dependencies/#optional-groups)
-which help manage dependencies for different parts of development such as `documentation`,
-`testing`, etc. The core dependencies are installed using the command:
+```shell
+virtualenv venv
+source venv/bin/activate
+```
+
+We use [Poetry](https://python-poetry.org/) to manage back-end dependencies:
+
+```shell
+pip install --upgrade pip poetry
+poetry install
+```
+
+### Install Yarn
+
+We use [Yarn](https://yarnpkg.com/) to manage front-end dependencies. Install it on MacOS
+using [Homebrew](https://brew.sh/):
 
-```bash
-python3 -m poetry install
+```shell
+brew install yarn
 ```
 
-Additional dependency groups can be installed using the `--with` flag. For example:
+Then install the project dependencies:
+```shell
+yarn
+```
+
+### Pulling Redis' Docker
+
+Redis is used to fetch the metrics reported by servers and clients during their runs.
 
-```bash
-python3 -m poetry install --with docs,test
+
+If you don't have Docker installed, follow [these instructions](https://docs.docker.com/desktop/)
+to install it. Then, pull [Redis' official docker image](https://hub.docker.com/_/redis)
+(we currently use version 7.2.4):
+```shell
+docker pull redis:7.2.4
 ```
 
-## documentation
+## Running the server
 
-If your project doesn't have documentation, copy the directory named `docs` to the root
-directory of your repository. The provided source files use [Furo](https://pradyunsg.me/furo/),
-a clean and customisable Sphinx documentation theme.
+### Start server's Redis instance
 
-In order to build the documentation, install the documentation dependencies as mentioned
-in the previous section, navigate to the `docs` folder and run the command:
+If it's your first time running it, create a container and run it with the command below:
+```shell
+docker run --name redis-florist-server -d -p 6379:6379 redis:7.2.4 redis-server --save 60 1 --loglevel warning
+```
 
-```bash
-make html
+From the second time on, you can just start it:
+```shell
+docker start redis-florist-server
 ```
 
-You can configure the documentation by updating the `docs/source/conf.py`. The markdown
-files in `docs/source` can be updated to reflect the project's documentation.
+### Start back-end and front-end servers
 
+Use Yarn to run both the back-end and front-end on server mode:
 
-## github actions
+```shell
+yarn dev
+```
+
+The front-end will be available at `http://localhost:3000`. If you want to access
+back-end APIs individually, they will be available at `https://localhost:8000`.
+
+## Running the client
+
+### Start client's Redis instance
+
+If it's your first time running it, create a container and run it with the command below:
+```shell
+docker run --name redis-florist-client -d -p 6380:6379 redis:7.2.4 redis-server --save 60 1 --loglevel warning
+```
+
+From the second time on, you can just start it:
+```shell
+docker start redis-florist-client
+```
+
+### Start back-end and front-end servers
+
+To start the client back-end service:
+
+```shell
+uvicorn florist.api.client:app --reload --port 8001
+```
 
-The template consists of some github action continuous integration workflows that you
-can add to your repository.
+The service will be available at `http://localhost:8001`.
 
-The available workflows are:
+# Contributing to the project
 
-- [code checks](https://github.com/VectorInstitute/FLorist/blob/main/.github/workflows/code_checks.yml): Static code analysis, code formatting and unit tests
-- [documentation](https://github.com/VectorInstitute/FLorist/blob/main/.github/workflows/docs_deploy.yml): Project documentation including example API reference
-- [integration tests](https://github.com/VectorInstitute/FLorist/blob/main/.github/workflows/integration_tests.yml): Integration tests
-- [publish](https://github.com/VectorInstitute/FLorist/blob/main/.github/workflows/publish.yml):
-Publishing python package to PyPI. Create a `PYPI_API_TOKEN` and add it to the
-repository's actions [secret variables](https://docs.github.com/en/actions/security-guides/using-secrets-in-github-actions)
-in order to publish PyPI packages when new software releases are created on Github.
+If you are a developer of the team or someone who wants to contribute to the project,
+please refer to the [CONTRIBUTING.md](https://github.com/VectorInstitute/FLorist/blob/main/CONTRIBUTING.md) file.
 
-The test workflows also compute coverage and upload code coverage metrics to
-[codecov.io](https://app.codecov.io/gh/VectorInstitute/FLorist). Create a
-`CODECOV_TOKEN` and add it to the repository's actions [secret variables](https://docs.github.com/en/actions/security-guides/using-secrets-in-github-actions).
+Please read and adhere to our [Code of Conduct](https://github.com/VectorInstitute/FLorist/blob/main/CODE_OF_CONDUCT.md)
+when making contributions to the project.