Skip to content

Commit

Permalink
deploy: ca043e2
Browse files Browse the repository at this point in the history
  • Loading branch information
@amrit110
amrit110 committed Oct 11, 2024
1 parent 9c73a31 commit f5a7b4d
Show file tree
Hide file tree
Showing 9 changed files with 239 additions and 199 deletions.
2 changes: 1 addition & 1 deletion searchindex.js
View file

Large diffs are not rendered by default.

18 changes: 9 additions & 9 deletions tutorials/eicu.html
View file
Original file line number Diff line number Diff line change
Expand Up @@ -615,7 +615,7 @@ <h2>Imports and instantiate <code class="docutils literal notranslate"><span cla
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-10-01 16:05:00,713 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Database setup, ready to run queries!
2024-10-11 10:03:37,592 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Database setup, ready to run queries!
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down Expand Up @@ -679,15 +679,15 @@ <h2>Example 1. Get all female patients discharged in 2014 (limit to 100 rows).<a
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-10-01 16:05:02,203 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
2024-10-11 10:03:38,579 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
</pre></div></div>
</div>
<div class="nboutput docutils container">
<div class="prompt empty docutils container">
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-10-01 16:05:02,205 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.651641 s
2024-10-11 10:03:38,581 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.170236 s
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down Expand Up @@ -722,15 +722,15 @@ <h2>Example 2. Get all patient encounters with diagnoses (<code class="docutils
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-10-01 16:05:03,620 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
2024-10-11 10:03:39,534 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
</pre></div></div>
</div>
<div class="nboutput docutils container">
<div class="prompt empty docutils container">
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-10-01 16:05:03,622 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 1.385223 s
2024-10-11 10:03:39,536 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.923233 s
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down Expand Up @@ -771,15 +771,15 @@ <h2>Example 3. Get potassium lab tests for patients discharged in the year 2014,
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-10-01 16:05:04,041 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
2024-10-11 10:03:40,069 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
</pre></div></div>
</div>
<div class="nboutput docutils container">
<div class="prompt empty docutils container">
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-10-01 16:05:04,047 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.382669 s
2024-10-11 10:03:40,071 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.486850 s
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down Expand Up @@ -818,15 +818,15 @@ <h2>Example 4. Get glucose medications (substring search) for female patients di
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-10-01 16:05:11,900 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
2024-10-11 10:03:44,141 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
</pre></div></div>
</div>
<div class="nboutput docutils container">
<div class="prompt empty docutils container">
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-10-01 16:05:11,902 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 7.801912 s
2024-10-11 10:03:44,143 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 4.032112 s
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down
58 changes: 29 additions & 29 deletions tutorials/eicu.ipynb
View file
Original file line number Diff line number Diff line change
Expand Up @@ -35,10 +35,10 @@
"id": "75a140e0-fb27-4319-862f-be54397abe5c",
"metadata": {
"execution": {
"iopub.execute_input": "2024-10-01T20:04:57.743899Z",
"iopub.status.busy": "2024-10-01T20:04:57.742789Z",
"iopub.status.idle": "2024-10-01T20:05:01.531124Z",
"shell.execute_reply": "2024-10-01T20:05:01.529088Z"
"iopub.execute_input": "2024-10-11T14:03:35.111332Z",
"iopub.status.busy": "2024-10-11T14:03:35.110110Z",
"iopub.status.idle": "2024-10-11T14:03:38.390373Z",
"shell.execute_reply": "2024-10-11T14:03:38.388596Z"
},
"tags": []
},
Expand All @@ -47,7 +47,7 @@
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-01 16:05:00,713 \u001b[1;37mINFO\u001b[0m cycquery.orm - Database setup, ready to run queries!\n"
"2024-10-11 10:03:37,592 \u001b[1;37mINFO\u001b[0m cycquery.orm - Database setup, ready to run queries!\n"
]
},
{
Expand Down Expand Up @@ -124,10 +124,10 @@
"id": "c1efa964-8978-4a0e-9892-5ea4ce9953a3",
"metadata": {
"execution": {
"iopub.execute_input": "2024-10-01T20:05:01.540127Z",
"iopub.status.busy": "2024-10-01T20:05:01.538235Z",
"iopub.status.idle": "2024-10-01T20:05:02.214346Z",
"shell.execute_reply": "2024-10-01T20:05:02.212279Z"
"iopub.execute_input": "2024-10-11T14:03:38.397772Z",
"iopub.status.busy": "2024-10-11T14:03:38.396948Z",
"iopub.status.idle": "2024-10-11T14:03:38.588580Z",
"shell.execute_reply": "2024-10-11T14:03:38.586813Z"
},
"tags": []
},
Expand All @@ -136,14 +136,14 @@
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-01 16:05:02,203 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
"2024-10-11 10:03:38,579 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-01 16:05:02,205 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.651641 s\n"
"2024-10-11 10:03:38,581 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.170236 s\n"
]
},
{
Expand Down Expand Up @@ -180,10 +180,10 @@
"id": "a7ab5fa3-e26b-47a7-818f-1bf367a55760",
"metadata": {
"execution": {
"iopub.execute_input": "2024-10-01T20:05:02.222547Z",
"iopub.status.busy": "2024-10-01T20:05:02.221864Z",
"iopub.status.idle": "2024-10-01T20:05:03.631297Z",
"shell.execute_reply": "2024-10-01T20:05:03.627986Z"
"iopub.execute_input": "2024-10-11T14:03:38.596396Z",
"iopub.status.busy": "2024-10-11T14:03:38.594869Z",
"iopub.status.idle": "2024-10-11T14:03:39.543370Z",
"shell.execute_reply": "2024-10-11T14:03:39.541602Z"
},
"tags": []
},
Expand All @@ -192,14 +192,14 @@
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-01 16:05:03,620 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
"2024-10-11 10:03:39,534 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-01 16:05:03,622 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 1.385223 s\n"
"2024-10-11 10:03:39,536 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.923233 s\n"
]
},
{
Expand Down Expand Up @@ -236,10 +236,10 @@
"id": "24043abc-1878-4e00-8229-36d4a0368b98",
"metadata": {
"execution": {
"iopub.execute_input": "2024-10-01T20:05:03.639215Z",
"iopub.status.busy": "2024-10-01T20:05:03.638412Z",
"iopub.status.idle": "2024-10-01T20:05:04.070202Z",
"shell.execute_reply": "2024-10-01T20:05:04.068472Z"
"iopub.execute_input": "2024-10-11T14:03:39.551008Z",
"iopub.status.busy": "2024-10-11T14:03:39.549980Z",
"iopub.status.idle": "2024-10-11T14:03:40.079404Z",
"shell.execute_reply": "2024-10-11T14:03:40.077526Z"
},
"tags": []
},
Expand All @@ -248,14 +248,14 @@
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-01 16:05:04,041 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
"2024-10-11 10:03:40,069 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-01 16:05:04,047 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.382669 s\n"
"2024-10-11 10:03:40,071 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.486850 s\n"
]
},
{
Expand Down Expand Up @@ -298,10 +298,10 @@
"id": "f6142f27-e8d1-453c-bfe2-2265d9ff1914",
"metadata": {
"execution": {
"iopub.execute_input": "2024-10-01T20:05:04.078243Z",
"iopub.status.busy": "2024-10-01T20:05:04.077111Z",
"iopub.status.idle": "2024-10-01T20:05:11.911457Z",
"shell.execute_reply": "2024-10-01T20:05:11.909768Z"
"iopub.execute_input": "2024-10-11T14:03:40.087395Z",
"iopub.status.busy": "2024-10-11T14:03:40.085936Z",
"iopub.status.idle": "2024-10-11T14:03:44.149996Z",
"shell.execute_reply": "2024-10-11T14:03:44.148201Z"
},
"tags": []
},
Expand All @@ -310,14 +310,14 @@
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-01 16:05:11,900 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
"2024-10-11 10:03:44,141 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-01 16:05:11,902 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 7.801912 s\n"
"2024-10-11 10:03:44,143 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 4.032112 s\n"
]
},
{
Expand Down
18 changes: 9 additions & 9 deletions tutorials/mimiciii.html
View file
Original file line number Diff line number Diff line change
Expand Up @@ -615,7 +615,7 @@ <h2>Imports and instantiate <code class="docutils literal notranslate"><span cla
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-10-01 16:05:28,856 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Database setup, ready to run queries!
2024-10-11 10:04:00,312 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Database setup, ready to run queries!
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down Expand Up @@ -649,15 +649,15 @@ <h2>Example 1. Get all male patients with a mortality outcome.<a class="headerli
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-10-01 16:05:36,267 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
2024-10-11 10:04:06,957 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
</pre></div></div>
</div>
<div class="nboutput docutils container">
<div class="prompt empty docutils container">
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-10-01 16:05:36,269 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.319342 s
2024-10-11 10:04:06,959 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.204972 s
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down Expand Up @@ -697,15 +697,15 @@ <h2>Example 2. Get all female patient encounters with diagnoses (<code class="do
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-10-01 16:05:39,635 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
2024-10-11 10:04:08,672 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
</pre></div></div>
</div>
<div class="nboutput docutils container">
<div class="prompt empty docutils container">
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-10-01 16:05:39,637 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 3.320573 s
2024-10-11 10:04:08,673 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 1.662382 s
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down Expand Up @@ -737,15 +737,15 @@ <h2>Example 3. Get potassium lab tests for female patients.<a class="headerlink"
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-10-01 16:05:39,925 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
2024-10-11 10:04:08,968 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
</pre></div></div>
</div>
<div class="nboutput docutils container">
<div class="prompt empty docutils container">
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-10-01 16:05:39,927 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.243667 s
2024-10-11 10:04:08,969 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.247393 s
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down Expand Up @@ -782,15 +782,15 @@ <h2>Example 4. Get AaDO2 carevue chart events for male patients that have a <cod
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-10-01 16:22:36,593 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
2024-10-11 10:17:37,144 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
</pre></div></div>
</div>
<div class="nboutput docutils container">
<div class="prompt empty docutils container">
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-10-01 16:22:36,647 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 1016.653061 s
2024-10-11 10:17:37,193 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 808.157255 s
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down
Loading

0 comments on commit f5a7b4d

Please sign in to comment.