MAINT: Format code

Vini2 · Dec 15, 2022 · 8925621 · 8925621
1 parent 6cb45e9
commit 8925621
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Showing 2 changed files with 13 additions and 6 deletions.
diff --git a/phables_utils/gene_utils.py b/phables_utils/gene_utils.py
@@ -1,6 +1,7 @@
 from collections import defaultdict
 from pathlib import Path
 
+
 def get_smg_unitigs(hmmout, mg_frac):
     """
     Get unitigs containing bacterial single-copy marker genes
@@ -58,7 +59,7 @@ def get_phrog_unitigs(phrogs, align_score, seq_identity):
     phrog_table_file = Path(__file__).parent / "phrogs" / "phrog_annot.tsv"
 
     phrog_dict = defaultdict(str)
-    
+
     with open(phrog_table_file, "r") as myfile:
         for line in myfile.readlines():
             if not line.startswith("phrog"):

diff --git a/setup.py b/setup.py
@@ -6,7 +6,13 @@
     long_description = fh.read()
 
 packages = setuptools.find_packages()
-package_data = {"phables_utils": ["phables_utils/*", "phables_utils/support/*", "phables_utils/phrogs/*"]}
+package_data = {
+    "phables_utils": [
+        "phables_utils/*",
+        "phables_utils/support/*",
+        "phables_utils/phrogs/*",
+    ]
+}
 
 data_files = [(".", ["LICENSE", "README.md"])]
 
@@ -26,10 +32,10 @@
     data_files=data_files,
     include_package_data=True,
     scripts=["phables"],
-    entry_points = {
-        'console_scripts': [
-            'combine_cov=phables_utils.support.combine_cov:main',
-            'gfa2fasta=phables_utils.support.gfa2fasta:main'
+    entry_points={
+        "console_scripts": [
+            "combine_cov=phables_utils.support.combine_cov:main",
+            "gfa2fasta=phables_utils.support.gfa2fasta:main",
         ],
     },
     classifiers=[