release files (excl ontology) 2023-11-01

VirtualFlyBrain · Nov 2, 2023 · 0e139c6 · 0e139c6
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diff --git a/docs/Assay.md b/docs/Assay.md
@@ -6,6 +6,7 @@ URI: [FBcv:0003025](http://purl.obolibrary.org/obo/FBcv_0003025)
 
 
 
+
 ```mermaid
  classDiagram
     class Assay
@@ -123,7 +124,6 @@ annotations:
     tag: owl.fstring
     value: ClassAssertion( FBcv:0003025 {id} )
 from_schema: http://github.org/vfb/vfb-scRNAseq-ontology/VFB_scRNAseq
-rank: 1000
 is_a: Class
 slots:
 - associated_dataset
@@ -173,7 +173,6 @@ annotations:
     tag: owl.fstring
     value: ClassAssertion( FBcv:0003025 {id} )
 from_schema: http://github.org/vfb/vfb-scRNAseq-ontology/VFB_scRNAseq
-rank: 1000
 is_a: Class
 attributes:
   method:

diff --git a/docs/Class.md b/docs/Class.md
@@ -6,6 +6,7 @@ URI: [http://github.org/vfb/vfb-scRNAseq-ontology/VFB_scRNAseq/:Class](http://gi
 
 
 
+
 ```mermaid
  classDiagram
     class Class
@@ -97,7 +98,6 @@ URI: [http://github.org/vfb/vfb-scRNAseq-ontology/VFB_scRNAseq/:Class](http://gi
 ```yaml
 name: Class
 from_schema: http://github.org/vfb/vfb-scRNAseq-ontology/VFB_scRNAseq
-rank: 1000
 is_a: Thing
 slots:
 - name
@@ -112,7 +112,6 @@ slots:
 ```yaml
 name: Class
 from_schema: http://github.org/vfb/vfb-scRNAseq-ontology/VFB_scRNAseq
-rank: 1000
 is_a: Thing
 attributes:
   name:

diff --git a/docs/Cluster.md b/docs/Cluster.md
@@ -6,6 +6,7 @@ URI: [FBcv:0009003](http://purl.obolibrary.org/obo/FBcv_0009003)
 
 
 
+
 ```mermaid
  classDiagram
     class Cluster
@@ -76,7 +77,7 @@ URI: [FBcv:0009003](http://purl.obolibrary.org/obo/FBcv_0009003)
 | [associated_clustering](associated_clustering.md) | 0..1 <br/> [Clustering](Clustering.md) | Clustering (FBlc ID) that the Cluster belongs to | direct |
 | [cell_number](cell_number.md) | 0..1 <br/> [Integer](Integer.md) | The number of cells in the Cluster (as integer) | direct |
 | [cell_type](cell_type.md) | 0..* <br/> [Thing](Thing.md) | Anatomy (FBbt IDs) for the Cluster | direct |
-| [hide_in_terminfo](hide_in_terminfo.md) | 0..1 <br/> [Boolean](Boolean.md) | Flag to hide expression edges in VFB Term Info pane | direct |
+| [hide_in_terminfo](hide_in_terminfo.md) | 0..1 <br/> [String](String.md) | Flag to hide expression edges in VFB Term Info pane | direct |
 | [expression_extent](expression_extent.md) | 0..1 <br/> [Float](Float.md) | Extent of expression of the given gene | direct |
 | [expression_level](expression_level.md) | 0..1 <br/> [Float](Float.md) | Level of expression of the given gene | direct |
 | [gene](gene.md) | 0..1 <br/> [Thing](Thing.md) | A gene (FBgn ID) expressed by the Cluster | direct |
@@ -143,7 +144,6 @@ annotations:
     tag: owl.fstring
     value: ClassAssertion( FBcv:0009003 {id} )
 from_schema: http://github.org/vfb/vfb-scRNAseq-ontology/VFB_scRNAseq
-rank: 1000
 is_a: Class
 slots:
 - stage
@@ -189,11 +189,11 @@ attributes:
     range: Thing
   hide_in_terminfo:
     name: hide_in_terminfo
-    description: Flag to hide expression edges in VFB Term Info pane.
+    description: Flag to hide expression edges in VFB Term Info pane. Range must be
+      string - boolean changes capitalisation and does not add datatype anyway.
     from_schema: http://github.org/vfb/vfb-scRNAseq-ontology/VFB_scRNAseq
     rank: 1000
     slot_uri: neo_custom:hide_in_terminfo
-    range: boolean
   expression_extent:
     name: expression_extent
     description: Extent of expression of the given gene.
@@ -244,7 +244,6 @@ annotations:
     tag: owl.fstring
     value: ClassAssertion( FBcv:0009003 {id} )
 from_schema: http://github.org/vfb/vfb-scRNAseq-ontology/VFB_scRNAseq
-rank: 1000
 is_a: Class
 attributes:
   associated_clustering:
@@ -297,15 +296,16 @@ attributes:
     range: Thing
   hide_in_terminfo:
     name: hide_in_terminfo
-    description: Flag to hide expression edges in VFB Term Info pane.
+    description: Flag to hide expression edges in VFB Term Info pane. Range must be
+      string - boolean changes capitalisation and does not add datatype anyway.
     from_schema: http://github.org/vfb/vfb-scRNAseq-ontology/VFB_scRNAseq
     rank: 1000
     slot_uri: neo_custom:hide_in_terminfo
     alias: hide_in_terminfo
     owner: Cluster
     domain_of:
     - Cluster
-    range: boolean
+    range: string
   expression_extent:
     name: expression_extent
     description: Extent of expression of the given gene.

diff --git a/docs/Clustering.md b/docs/Clustering.md
@@ -6,6 +6,7 @@ URI: [FBcv:0009002](http://purl.obolibrary.org/obo/FBcv_0009002)
 
 
 
+
 ```mermaid
  classDiagram
     class Clustering
@@ -115,7 +116,6 @@ annotations:
     tag: owl.fstring
     value: ClassAssertion( FBcv:0009002 {id} )
 from_schema: http://github.org/vfb/vfb-scRNAseq-ontology/VFB_scRNAseq
-rank: 1000
 is_a: Class
 slots:
 - associated_dataset
@@ -149,7 +149,6 @@ annotations:
     tag: owl.fstring
     value: ClassAssertion( FBcv:0009002 {id} )
 from_schema: http://github.org/vfb/vfb-scRNAseq-ontology/VFB_scRNAseq
-rank: 1000
 is_a: Class
 attributes:
   associated_sample_for_clustering:

diff --git a/docs/Dataset.md b/docs/Dataset.md
@@ -6,6 +6,7 @@ URI: [FBcv:0003023](http://purl.obolibrary.org/obo/FBcv_0003023)
 
 
 
+
 ```mermaid
  classDiagram
     class Dataset
@@ -134,7 +135,6 @@ annotations:
     tag: owl.fstring
     value: ClassAssertion( FBcv:0003023 {id} )
 from_schema: http://github.org/vfb/vfb-scRNAseq-ontology/VFB_scRNAseq
-rank: 1000
 is_a: Class
 slots:
 - neo_label
@@ -215,7 +215,6 @@ annotations:
     tag: owl.fstring
     value: ClassAssertion( FBcv:0003023 {id} )
 from_schema: http://github.org/vfb/vfb-scRNAseq-ontology/VFB_scRNAseq
-rank: 1000
 is_a: Class
 attributes:
   publication:

diff --git a/docs/Sample.md b/docs/Sample.md
@@ -6,6 +6,7 @@ URI: [FBcv:0003024](http://purl.obolibrary.org/obo/FBcv_0003024)
 
 
 
+
 ```mermaid
  classDiagram
     class Sample
@@ -134,7 +135,6 @@ annotations:
     tag: owl.fstring
     value: ClassAssertion( FBcv:0003024 {id} )
 from_schema: http://github.org/vfb/vfb-scRNAseq-ontology/VFB_scRNAseq
-rank: 1000
 is_a: Class
 slots:
 - stage
@@ -187,7 +187,6 @@ annotations:
     tag: owl.fstring
     value: ClassAssertion( FBcv:0003024 {id} )
 from_schema: http://github.org/vfb/vfb-scRNAseq-ontology/VFB_scRNAseq
-rank: 1000
 is_a: Class
 attributes:
   sample_tissue:

diff --git a/docs/Thing.md b/docs/Thing.md
@@ -6,6 +6,7 @@ URI: [owl:Class](http://www.w3.org/2002/07/owl#Class)
 
 
 
+
 ```mermaid
  classDiagram
     class Thing
@@ -95,7 +96,6 @@ URI: [owl:Class](http://www.w3.org/2002/07/owl#Class)
 ```yaml
 name: Thing
 from_schema: http://github.org/vfb/vfb-scRNAseq-ontology/VFB_scRNAseq
-rank: 1000
 slots:
 - id
 class_uri: owl:Class
@@ -109,7 +109,6 @@ class_uri: owl:Class
 ```yaml
 name: Thing
 from_schema: http://github.org/vfb/vfb-scRNAseq-ontology/VFB_scRNAseq
-rank: 1000
 attributes:
   id:
     name: id

diff --git a/docs/hide_in_terminfo.md b/docs/hide_in_terminfo.md
@@ -1,7 +1,7 @@
 # Slot: hide_in_terminfo
 
 
-_Flag to hide expression edges in VFB Term Info pane._
+_Flag to hide expression edges in VFB Term Info pane. Range must be string - boolean changes capitalisation and does not add datatype anyway._
 
 
 
@@ -28,7 +28,7 @@ URI: [neo_custom:hide_in_terminfo](http://n2o.neo/custom/hide_in_terminfo)
 
 ## Properties
 
-* Range: [Boolean](Boolean.md)
+* Range: [String](String.md)
 
 
 
@@ -55,15 +55,16 @@ URI: [neo_custom:hide_in_terminfo](http://n2o.neo/custom/hide_in_terminfo)
 <details>
 ```yaml
 name: hide_in_terminfo
-description: Flag to hide expression edges in VFB Term Info pane.
+description: Flag to hide expression edges in VFB Term Info pane. Range must be string
+  - boolean changes capitalisation and does not add datatype anyway.
 from_schema: http://github.org/vfb/vfb-scRNAseq-ontology/VFB_scRNAseq
 rank: 1000
 slot_uri: neo_custom:hide_in_terminfo
 alias: hide_in_terminfo
 owner: Cluster
 domain_of:
 - Cluster
-range: boolean
+range: string
 
 ```
 </details>
diff --git a/docs/index.md b/docs/index.md
@@ -1,8 +1,9 @@
 # VFB_scRNAseq
 
-None
+
 
 URI: http://github.org/vfb/vfb-scRNAseq-ontology/VFB_scRNAseq
+
 Name: VFB_scRNAseq
 
 
@@ -11,14 +12,15 @@ Name: VFB_scRNAseq
 
 | Class | Description |
 | --- | --- |
-| [Assay](Assay.md) |  |
-| [Class](Class.md) |  |
-| [Cluster](Cluster.md) |  |
-| [Clustering](Clustering.md) |  |
-| [Dataset](Dataset.md) |  |
-| [Publication](Publication.md) |  |
-| [Sample](Sample.md) |  |
-| [Thing](Thing.md) |  |
+| [Thing](Thing.md) | None |
+| &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;[Class](Class.md) | None |
+| &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;[Assay](Assay.md) | None |
+| &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;[Cluster](Cluster.md) | None |
+| &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;[Clustering](Clustering.md) | None |
+| &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;[Dataset](Dataset.md) | None |
+| &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;[Sample](Sample.md) | None |
+| &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;[Publication](Publication.md) | None |
+
 
 
 ## Slots

diff --git a/src/ontology/imports/merged_import.owl b/src/ontology/imports/merged_import.owl
@@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/VFB_scRNAseq/imports/merged_import.owl>
-<http://purl.obolibrary.org/obo/VFB_scRNAseq/releases/2023-10-31/imports/merged_import.owl>
-Annotation(owl:versionInfo "2023-10-31")
+<http://purl.obolibrary.org/obo/VFB_scRNAseq/releases/2023-11-01/imports/merged_import.owl>
+Annotation(owl:versionInfo "2023-11-01")
 
 Declaration(Class(<http://purl.obolibrary.org/obo/FBbt_00000001>))
 Declaration(Class(<http://purl.obolibrary.org/obo/FBbt_00000052>))