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1. AgrVATE AgrVATE Public

   Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.

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2. GASP GASP Public

   Raw data and code for the Genomic Analysis of Singles and Pools (GASP) project - https://doi.org/10.1099/mgen.0.001111

3. LIVID LIVID Public

   LIVID is a tool for extracting a locus from a given bacterial genome sequence and identifying variants when compared to a reference locus.

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4. SCAPE SCAPE Public

   SCAPE - StaphyloCoccus Aureus Pangenome Exploration

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5. erinyoung/tulatyper erinyoung/tulatyper Public

   Subtyping of Francisella tularensis subtypes

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6. SEPI SEPI Public

   SEPI - Salmonella enterica poultry imports . Data analysis code for the study 'Genomic surveillance of Salmonella enterica Minnesota strains from Brazilian poultry products imported into South Africa'