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Global search for novel Eukaryotic proteins in public metagenomic data using MetaEuk

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EukBook

Global search for novel Eukaryotic proteins in public metagenomic data using MetaEuk

Sample accessions must be passed to snakamekae via command line option: snakemake [options] --configfile path/to/samples/yaml

samples.yaml file should look like:

SAMPLESET: set1 SAMPLE:

  • SRR5918406
  • SRR5788362
  • SRR5788367
  • ...

In future, an additional script will be able to create separate sample_setxx.yaml files from a text file with a list of accessions.

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Global search for novel Eukaryotic proteins in public metagenomic data using MetaEuk

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