Global search for novel Eukaryotic proteins in public metagenomic data using MetaEuk
Sample accessions must be passed to snakamekae via command line option: snakemake [options] --configfile path/to/samples/yaml
samples.yaml file should look like:
SAMPLESET: set1 SAMPLE:
- SRR5918406
- SRR5788362
- SRR5788367
- ...
In future, an additional script will be able to create separate sample_setxx.yaml files from a text file with a list of accessions.