Quantify tissue damage with ML
Any comments or questions can be directed to: Will Liberti at [email protected]
If you use this in your work, please cite:
Alveolar epithelial cell fate is maintained in a spatially restricted manner to promote lung regeneration after acute injury, Liberti et al.
Before you begin, make sure you have the following MATLAB toolboxes installed:
Take this example image:
>> % cd('images'); enter the images directory
>> RGB1 = DL_demo % load 'image00.jpg'
Isolate the moderately damaged tissue:
Isolate just the severely damaged tissue:
Sometimes you will want to cluster several images, or cluster relative to a known healthy, or known damaged reference sample.
>> % cd('images/Unprocessed')
>> out = DL_demo_ref('S.jpg')