Merge branch 'carlinmack-1855-rebase'

scholia/app/templates/base.html

@@ -106,11 +106,18 @@
     $.getJSON(url, function (data) {
 	 var item = data.entities["{{ q }}"];
 	 if ('en' in item.labels) {
-	     var title = item.labels.en.value
+	     var title = item.labels.en.value;
+	     var wdtitle = item.labels.en.value;
 	     $("#h1").text(title);
 	     $(".self").text(title);
        $("title").text(title + " - Scholia");
 
+       var crossref_button = document.getElementById("check-crossref-button");
+       if (title && crossref_button) {
+        crossref_button.onclick = () => {get_dois_from_crossref(wdtitle)}
+        crossref_button.innerHTML = "Check Crossref"
+       }
+
 	     {% if request.path.endswith("curation") or request.path.endswith("curation/") %}
 	     $("#h1").text("Improve " + currentAspect + ": " + title);
 

scholia/app/templates/check-crossref.html

@@ -0,0 +1,9 @@
+<h2 id="check-crossref">Check Crossref for new papers</h2>
+
+<p>If you think that Wikidata is missing recent papers published on this topic, you can click the button below to check
+  the 20 most recent papers in Crossref. You will be redirected to the <a
+    href="/id-to-quickstatements">Identifier to Quickstatements</a> tool where you can see the presence of these in
+  Wikidata and have the opportunity to create these items in Wikidata using <a
+    href="https://www.wikidata.org/wiki/Help:QuickStatements">QuickStatements</a>.</p>
+
+<button type="button" class="btn btn-primary mx-auto d-block" id="check-crossref-button">Loading...</button>

scholia/app/templates/disease-curation.html

@@ -0,0 +1,7 @@
+{% extends "q_curation.html" %}
+
+{% block curation_panels %}
+
+{% include 'check-crossref.html' %}
+
+{% endblock %}

scholia/app/templates/gene-curation.html

@@ -0,0 +1,7 @@
+{% extends "q_curation.html" %}
+
+{% block curation_panels %}
+
+{% include 'check-crossref.html' %}
+
+{% endblock %}

scholia/app/templates/protein-curation.html

@@ -0,0 +1,7 @@
+{% extends "q_curation.html" %}
+
+{% block curation_panels %}
+
+{% include 'check-crossref.html' %}
+
+{% endblock %}

scholia/app/templates/q_curation.html

@@ -22,5 +22,73 @@ <h1 id="h1">Improve...</h1>
 
 {% block curation_panels %}{% endblock %}
 
+<script>
+  function get_dois_from_crossref(query_string) {
+      const button = document.getElementById("check-crossref-button");
+      button.innerHTML = "Loading...";
+      button.classList.remove("d-block");
+      button.classList.add("d-none");
+      button.insertAdjacentHTML('beforebegin',
+        "<div id='check-crossref-loader' class='loader'><div></div><div></div><div></div></div>"
+      )
+      const currentDate = new Date().toISOString().split('T')[0];
+      const params = {
+        'query': query_string,
+        'select': 'DOI',
+        'filter': 'type:journal-article,until-issued-date:' + currentDate,
+        'rows': 20,
+        'sort': 'issued',
+        'order': 'desc',
+      };
+
+      // Create a URLSearchParams object to construct the query parameters
+      const searchParams = new URLSearchParams();
+
+      // Loop through the dictionary and add each key-value pair to the searchParams
+      for (const [key, value] of Object.entries(params)) {
+        searchParams.append(key, value);
+      }
+
+      // Construct the final URL by appending the search parameters
+      const url = `https://api.crossref.org/works/?${searchParams.toString()}`;
+      const error_message = "The API failed which could be due to a problem with your connection or with the upstream server. If the issue persists <a href='https://github.com/WDscholia/scholia/issues/new?assignees=&labels=bug&projects=&template=bug_report.md&title=''>submit a bug report on GitHub</a>"
+
+      fetch(url)
+        .then(response => response.json())
+        .then(data => {
+          if (data['status'] == 'ok') {
+            if (data["message"]["total-results"] > 0){
+              items = data.message?.items
+              if (items) {
+                dois = items.map(x => x.DOI).join(" ");
+                window.location.href = "/id-to-quickstatements?query=" + dois;
+              }
+            } else {
+              $('#check-crossref-loader').remove();
+              button.insertAdjacentHTML('afterend', `<div class="alert alert-secondary" role="alert">No results returned for ${data.message.query['status-terms']}</div>`);
+              button.innerHTML = "Check Crossref";
+              button.classList.remove("d-none");
+              button.classList.add("d-block");
+            }
+          } else {
+            console.error(`API status was ${data.status}`)
+            console.error(data)
+            $('#check-crossref-loader').remove();
+            button.insertAdjacentHTML('afterend', `<div class="alert alert-warning" role="alert">${error_message}</div>`);
+            button.innerHTML = "Check Crossref";
+            button.classList.remove("d-none");
+            button.classList.add("d-block");
+          }
+        })
+        .catch(error => {
+          console.error(error);
+          $('#check-crossref-loader').remove();
+          button.insertAdjacentHTML('afterend', `<div class="alert alert-warning" role="alert">${error_message}</div>`);
+          button.innerHTML = "Check Crossref";
+          button.classList.remove("d-none");
+          button.classList.add("d-block");
+        });
+  }
+</script>
 
 {% endblock %}

scholia/app/templates/taxon-curation.html

@@ -12,6 +12,8 @@
 
 {% block curation_panels %}
 
+{% include 'check-crossref.html' %}
+
 <h2 id="missing-topic-tags-for-taxon-name">Missing topic tags for taxon name</h2>
 
 <p>This table lists works which have this taxon's name in the title but that have not been annotated as having it as <i>main subject</i> (<a href="https://www.wikidata.org/entity/P921">P921</a>).<p/> 

scholia/doi.py

@@ -93,7 +93,7 @@ def get_author_name(author_dict):
                     get_author_name(author)
                     for author in entry.get("author", [])
                 ],
-                # not full text url if the paper is closed source
+                # not full text URL if the paper is closed source
                 # "full_text_url":
                 #      entry.get("resource", {}).get("primary", {}).get("URL"),
                 "date_P577": date,