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Add 3 and 9 hr increment files to IC staging (NOAA-EMC#2876)
Adds files `atmi009.nc`, `atmi003.nc`, `ratmi009.nc`, and `ratmi003.nc` to list of files to be staged for ICs, if available. These are necessary for starting an IAU run, and are currently missing. Resolves NOAA-EMC#2874
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