Merge pull request #240 from WormBase/jb2-staging

adding help plugin to build script
WormBase · Oct 18, 2023 · f0aca9b · f0aca9b
2 parents d38f6c7 + 2e45916
commit f0aca9b
Show file tree

Hide file tree

Showing 2 changed files with 13 additions and 2 deletions.
diff --git a/jbrowse2/bin/make_global_config.pl b/jbrowse2/bin/make_global_config.pl
@@ -126,16 +126,28 @@
 # but darkened to improve contrast in some JB2 UI elements
 $$json{'configuration'}{'theme'}{'palette'}{'tertiary'}{'main'}  = '#9da9b6';
 
+#add config for sorting/collapsing categories
+$$json{'configuration'}{'hierarchical'}{'sort'}{'trackNames'} = $JSON::true;
+$$json{'configuration'}{'hierarchical'}{'sort'}{'categories'} = $JSON::true;
+$$json{'configuration'}{'hierarchical'}{'defaultCollapsed'}{'subCategories'} = $JSON::true;
+$$json{'configuration'}{'hierarchical'}{'defaultCollapsed'}{'topLevelCategories'} = $JSON::true;
+
+
+
 my $plugin;
 my $hex;
 $$hex{'name'}          = "HexJexlPlugin";
 $$hex{'umdLoc'}{'uri'} = "hex_plugin.js";
 my $vColor;
 $$vColor{'name'}       = "VariantColorPlugin";
 $$vColor{'umdLoc'}{'uri'} = "variantColor_plugin.js";
-my @plugins = ($hex, $vColor);
+my $help;
+$$help{'name'}         = "JBrowseSiteSpecificHelp";
+$$help{'umdLoc'}{'uri'}= "plugins/JBrowseSiteSpecificHelp/jbrowse-site-specific-help.umd.development.js";
+my @plugins = ($hex, $vColor, $help);
 $$json{'plugins'} = \@plugins;
 
+
 #that might be all that's needed
 #I dont think we need several of the things that are empty arrays 
 #in the existing config

diff --git a/jbrowse2/config/track_configs/rnaseq_splice.json b/jbrowse2/config/track_configs/rnaseq_splice.json