Merge pull request #206 from WormBase/fix/nonsense-translation

fix the display of premature stop codon
WormBase · Dec 18, 2019 · 482452b · 482452b
2 parents 7760315 + 7e644bf
commit 482452b
Showing 1 changed file with 4 additions and 1 deletion.
diff --git a/src/rest_api/classes/variation/widgets/molecular_details.clj b/src/rest_api/classes/variation/widgets/molecular_details.clj
@@ -177,7 +177,10 @@
          :protein (pack-obj protein)
          :peptide (pack-obj peptide)
          :wildtype_conceptual_translation pseq ;eg. WBVar00466445
-         :mutant_conceptual_translation (subs pseq 0 (parse-int mutant-stop))}
+         :mutant_conceptual_translation (->> (parse-int mutant-stop)
+                                             (dec)
+                                             (subs pseq 0)
+                                             (format "%s*"))}
         (get-feature-affected-evidence holder)))))
 
 (defn- get-missense-obj [predicted-cds-holder]