Fix flamingpy build and CI #1511
Workflow file for this run
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| name: Build & Tests | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - develop | |
| - sims2cloud | |
| pull_request: | |
| branches: | |
| - main | |
| - develop | |
| - sims2cloud | |
| jobs: | |
| core-unit-tests: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {python-version: 3.8, use_mpi: 'no-mpi'} | |
| - {python-version: 3.8, use_mpi: 'mpi'} | |
| - {python-version: 3.9, use_mpi: 'no-mpi'} | |
| - {python-version: '3.10', use_mpi: 'no-mpi'} | |
| env: | |
| USE_MPI: ${{ matrix.config.use_mpi }} | |
| # Please retain a cov score of ~96% to avoid unit tests marginally failing. | |
| COVERAGE_FLAGS: "--cov=flamingpy --cov-report=xml --cov-report=term-missing --cov-fail-under=95" | |
| XDIST_FLAGS: "-n auto --dist=loadfile" | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Setup python ${{ matrix.config.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.config.python-version }} | |
| - name: Get the latest pip | |
| run: python -m pip install --upgrade pip | |
| - name: Install compilation and testing requirements of flamingpy | |
| run: | | |
| if [ "$USE_MPI" == "mpi" ]; then | |
| sudo apt install -y libopenmpi-dev | |
| python -m pip install mpi4py>=3.1.3 | |
| fi | |
| python -m pip install -r dev_requirements.txt | |
| - name: Build flamingpy from Source | |
| run: | | |
| python setup.py develop | |
| python setup.py build_cmake --inplace | |
| - name: Run tests | |
| run: | | |
| python -m pytest tests/ $COVERAGE_FLAGS $XDIST_FLAGS | |
| if [ "$USE_MPI" == "mpi" ]; then | |
| mpirun -np 2 python flamingpy/simulations.py | |
| fi | |
| - name: Adjust coverage file for Codecov | |
| run: bash <(sed -i 's/filename=\"/filename=\"flamingpy\//g' coverage.xml) | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v2 | |
| with: | |
| file: ./coverage.xml |