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* version bump * Bump to core release 6.0.22 (hapifhir#5028) * Bump to core release 6.0.16 * Bump to core version 6.0.20 * Fix errors thrown as a result of VersionSpecificWorkerContextWrapper * Bump to core 6.0.22 * Resolve 5126 hfj res ver prov might cause migration error on db that automatically indexes the primary key (hapifhir#5127) * dropped old index FK_RESVERPROV_RES_PID on RES_PID column before adding IDX_RESVERPROV_RES_PID * added changelog * changed to valid version number * changed to valid version number, need to be ordered by version number... * 5123 - Use DEFAULT partition for server-based requests if none specified (hapifhir#5124) 5123 - Use DEFAULT partition for server-based requests if none specified * consent remove all suppresses next link in bundle (hapifhir#5119) * added FIXME with source of issue * added FIXME with root cause * added FIXME with root cause * Providing solution to the issue and removing fixmes. * Providing changelog * auto-formatting. * Adding new test. * Adding a new test for standard paging * let's try this and see if it works...? * fix tests * cleanup to trigger a new run * fixing tests --------- Co-authored-by: Ken Stevens <[email protected]> Co-authored-by: peartree <[email protected]> * 5117 MDM Score for No Match Fields Should Not Be Included in Total Score (hapifhir#5118) * fix, test, changelog * fix, test, changelog --------- Co-authored-by: justindar <[email protected]> * _source search parameter needs to support modifiers (hapifhir#5095) _source search parameter needs to support modifiers - added support form :contains, :missing, :above modifiers * Fix HFQL docs (hapifhir#5151) * Expunge operation on codesystem may throw 500 internal error with precondition fail message. (hapifhir#5156) * Initial failing test. * Solution with changelog. * fixing format. * Addressing comment from code review. * fixing failing test. --------- Co-authored-by: peartree <[email protected]> * documentation update (hapifhir#5154) Co-authored-by: leif stawnyczy <[email protected]> * Fix hsql jdbc driver deps (hapifhir#5168) Avoid non-included classes in jdbc driver dependencies. * $delete-expunge over 10k resources will now delete all resources (hapifhir#5144) * First commit with very rough fix and unit test. * Refinements to ResourceIdListStep and Batch2DaoSvcImpl. Make LoadIdsStepTest pass. Enhance Batch2DaoSvcImplTest. * Spotless * Fix checkstyle errors. * Fix test failures. * Minor refactoring. New unit test. Finalize changelist. * Spotless fix. * Delete now useless code from unit test. * Delete more useless code. * Test pre-commit hook * More spotless fixes. * Address most code review feedback. * Remove use of pageSize parameter and see if this breaks the pipeline. * Remove use of pageSize parameter and see if this breaks the pipeline. * Fix the noUrl case by passing an unlimited Pegeable instead. Effectively stop using page size for most databases. * Deprecate the old method and have it call the new one by default. * updating documentation (hapifhir#5170) Co-authored-by: leif stawnyczy <[email protected]> * _source search parameter modifiers for Subscription matching (hapifhir#5159) * _source search parameter modifiers for Subscription matching - test, implementation and changelog * Removal of meta tags during updates do not trigger subscription (hapifhir#5181) * Initial failing test. * adding solution; fixing documentation; * spotless apply * adding changelog * modifying current test --------- Co-authored-by: peartree <[email protected]> * Issue 5173 get gateway everything doesnt return all patients (hapifhir#5174) * Failing test * Also set offset and count in base DAO override * Changelog * Fix for specific case where count has been set in parameters * spotless * Improve checks --------- Co-authored-by: juan.marchionatto <[email protected]> * Do not 500 and continue IG ingestion when different IGs try to save different ValueSets with colliding FHIR IDs (hapifhir#5175) * First commit with failing unit test and small tweaks. * Swallow resource version exceptions from colliding ValueSet OIDs and log a descriptive error instead. Add more detailed unit testing. * Tweaks to logic and update the changelog. Reverse all changes to TermReadSvcImpl. * Revert PackageResourceParsingSvc to release branch baseline. * Accept code reviewer suggestion to change changelog description. Co-authored-by: michaelabuckley <[email protected]> --------- Co-authored-by: michaelabuckley <[email protected]> * Fix link * Remove target slf4j version * dont use new API for a bit (hapifhir#5191) * Return DropIdGeneratorTask from the Builder to permit clients to mutate the (hapifhir#5193) DropIdGeneratorTask. * Dqm performance bug update and provider loader fix (hapifhir#5180) * update tests, move properties, update operation loader * update wip * remove test * fixing tests, adding config * update config and provider loader * fix bundles * fix cache settings on tests * version bump and change log * version bump * fix formatting * CVE-2022-45868 * wip cve change * cve h2 add back in --------- Co-authored-by: justin.mckelvy <[email protected]> * bulkExportReuse with POST and GET (hapifhir#5161) * string manipulation * Code to ensure bulkExportReuse works with POST and GET requests * Added formatting changes * Fixed tests that were not working * Formatting * Code clean up * fixing test failures * fixing test failures * Removed arrOfParams to now utilize ObjectMapper * Removing stack trace and adding an exception * Fixed test issue * formatting * formatting * Resolving code review comments * Reduce size of subscription max results (hapifhir#5194) * Reduce MAX_SUBSCRIPTION_RESULTS to 10000 * Add changelog * 5037 goldenresource remains when target resource deleted (hapifhir#5038) * draft test and fix * remove unused fields * remove unused fields * remove unused fields * draft test + solution for possible match case * combine sql statement + more error checking * add test case for possible duplicate * add config for autodeleting grs * refactoring, adding support for mongo, docs * refactoring + fixing mongo queries * add changelogs * fix both way link removal * clean up test comments * rename method * remove unnecessary bean * merge master/resolve conflicts * mvn spotless * address comment * changes to avoid version bumping * spotless * change error code --------- Co-authored-by: justindar <[email protected]> * dont use new API for a bit (hapifhir#5190) * licenses * Fixing terminology upload with large file. (hapifhir#5204) * create initial test * adding fix; adding changelog; * fixing format. --------- Co-authored-by: peartree <[email protected]> * up version to 6.8.0 from snapshot * fix up some duplicate deps for skipping * Force deployment of other projects * make dummy java class to pass sonatype checks * make dummy java class to pass sonatype checks * Cheeky test removal * Another test removal * Updating version to: 6.8.1 post release. * adding back in tests for release pipelines * Fix bad version insert * Bump to core library version 6.0.22.2 (hapifhir#5261) * Bump to core library version 6.0.22.2 * Bump HAPI to 6.8.1-SNAPSHOT, core library version to 6.0.22.2 * up version to 6.8.1 * Prevent remote deployment * Updating version to: 6.8.2 post release. * Re-add deploy plugin skip * re-add version * Bump core library version to 6.0.22.2 * Bump HAPI to 6.8.2-SNAPSHOT * Fix up version enum * Version bump * Updating version to: 6.8.3 post release. * Make display name validation configurable (hapifhir#5321) * Test fixes * Build cleanup * Initial test passing * Test fixes * Tests all seem to be working * Make display validation level configurable * Should be all working * Add changelog * Add to changelog --------- Co-authored-by: Tadgh <[email protected]> * wip * wip * Fix conflicts * add backport info * Fix versioning * test fixes * disabled 1 test * backported 5271 to fix validation message tests * wip * Changelog * Fix tests * Fix backport * Add upgrade.md * Fix test * Fix key * Updating version to: 6.8.4 post release. * 5353 iterate on revincludes and includes does not return correct resources when used with non iterate revincludes (hapifhir#5354) * added failing test * implemented solution * added doc generation * added changelog * fixed the order of includes and revincludes, based on what was implemented before * fixed formatting * fixed wording --------- Co-authored-by: Steven Li <[email protected]> * added changelog * Updating version to: 6.8.5 post release. * merge back 5377 * changelog * undo unintended changes from mergeback --------- Co-authored-by: tadgh <[email protected]> Co-authored-by: dotasek <[email protected]> Co-authored-by: TynerGjs <[email protected]> Co-authored-by: Steve Corbett <[email protected]> Co-authored-by: Ken Stevens <[email protected]> Co-authored-by: Ken Stevens <[email protected]> Co-authored-by: peartree <[email protected]> Co-authored-by: jdar8 <[email protected]> Co-authored-by: justindar <[email protected]> Co-authored-by: volodymyr-korzh <[email protected]> Co-authored-by: Nathan Doef <[email protected]> Co-authored-by: Etienne Poirier <[email protected]> Co-authored-by: TipzCM <[email protected]> Co-authored-by: leif stawnyczy <[email protected]> Co-authored-by: michaelabuckley <[email protected]> Co-authored-by: Luke deGruchy <[email protected]> Co-authored-by: jmarchionatto <[email protected]> Co-authored-by: juan.marchionatto <[email protected]> Co-authored-by: Justin McKelvy <[email protected]> Co-authored-by: justin.mckelvy <[email protected]> Co-authored-by: LalithE <[email protected]> Co-authored-by: Long Ma <[email protected]> Co-authored-by: markiantorno <[email protected]> Co-authored-by: volodymyr <[email protected]> Co-authored-by: James Agnew <[email protected]> Co-authored-by: StevenXLi <[email protected]> Co-authored-by: Steven Li <[email protected]>
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