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Xinglab · Oct 30, 2020 · 332d889 · 332d889
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commit 332d889
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/README.md b/README.md
@@ -587,17 +587,17 @@ This step will realign multi-mapped reads to each putative genome location with
 
 
 ```
-CLAM realigner -i clam/K562_RBFOX2_Inp/ -o clam/K562_RBFOX2_Inp --winsize 50 --max-tags -1 --read-tagger-method start
+CLAM realigner -i clam/K562_RBFOX2_Inp/multi.sorted.bam -o clam/K562_RBFOX2_Inp --winsize 50 --max-tags -1 --read-tagger-method start
 ```
 
 
 ```
-CLAM realigner -i clam/K562_RBFOX2_rep1_IP/ -o clam/K562_RBFOX2_rep1_IP --winsize 50 --max-tags -1 --read-tagger-method start
+CLAM realigner -i clam/K562_RBFOX2_rep1_IP/multi.sorted.bam -o clam/K562_RBFOX2_rep1_IP --winsize 50 --max-tags -1 --read-tagger-method start
 ```
 
 
 ```
-CLAM realigner -i clam/K562_RBFOX2_rep2_IP/ -o clam/K562_RBFOX2_rep2_IP --winsize 50 --max-tags -1 --read-tagger-method start
+CLAM realigner -i clam/K562_RBFOX2_rep2_IP/multi.sorted.bam -o clam/K562_RBFOX2_rep2_IP --winsize 50 --max-tags -1 --read-tagger-method start
 ```
 
 [TOC](#section0)