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@YosefLab

Yosef Lab

Department of Systems Immunology, Weizmann Institute of Science

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  1. VISION VISION Public

    Signature Analysis and Visualization for Single-Cell RNA-seq

    R 167 33

  2. Cassiopeia Cassiopeia Public

    A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction

    Python 88 27

  3. Compass Compass Public

    In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes

    Python 106 30

  4. Hotspot Hotspot Public

    Python 113 15

  5. epitome epitome Public

    Pipeline for predicting ChIP-seq peaks in novel cell types using chromatin accessibility

    Python 10 4

  6. popV popV Public

    Python 75 15

Repositories

Showing 10 of 64 repositories
  • velovi Public
    YosefLab/velovi’s past year of commit activity
    Python 39 BSD-3-Clause 7 8 2 Updated May 12, 2025
  • treedata Public

    anndata with trees

    YosefLab/treedata’s past year of commit activity
    Python 4 BSD-3-Clause 3 0 1 Updated May 12, 2025
  • scib-metrics Public

    Accelerated, Python-only, single-cell integration benchmarking metrics

    YosefLab/scib-metrics’s past year of commit activity
    Python 58 BSD-3-Clause 16 16 4 Updated May 12, 2025
  • popV Public
    YosefLab/popV’s past year of commit activity
    Python 75 MIT 15 3 1 Updated May 12, 2025
  • resolvi-reproducibility Public

    Reproducibility notebooks for resolVI manuscript

    YosefLab/resolvi-reproducibility’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated May 8, 2025
  • Cassiopeia Public

    A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction

    YosefLab/Cassiopeia’s past year of commit activity
    Python 88 MIT 27 23 (3 issues need help) 8 Updated Apr 28, 2025
  • CellRangerIDE Public
    YosefLab/CellRangerIDE’s past year of commit activity
    Python 0 0 0 0 Updated Apr 23, 2025
  • Hotspot Public
    YosefLab/Hotspot’s past year of commit activity
    Python 113 MIT 15 18 0 Updated Apr 19, 2025
  • scvi-hub-reproducibility Public

    Reproducibility of results/figures from scvi-hub paper

    YosefLab/scvi-hub-reproducibility’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 0 0 0 Updated Apr 16, 2025
  • pycea Public

    scverse lineage tracing analysis toolkit

    YosefLab/pycea’s past year of commit activity
    Python 0 BSD-3-Clause 1 0 0 Updated Apr 2, 2025

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