ZFIN-9444 fix WashZU accession and have them show the defline plus se…

…quence when clicking on them

lib/DB_functions/get_dblink_acc_num_display.sql

@@ -32,25 +32,7 @@ CREATE OR REPLACE FUNCTION "public"."get_dblink_acc_num_display"("dblinkfdbconti
         and fdb_db_pk_id = fdbcont_fdb_db_id;
 
 
-  if (dblinkDbName = 'WashUZ') then
-    -- we need to prepend 'wz' to the acc_num
-    dblinkAccNumDisplay := 'wz' || dblinkAccNum;
-
-  --replace the miranda acc num with one that looks more like the 
-  --way curators want to display miRNA names at ZFIN.
-  --ZDB-FDBCONT-090529-1, dre-let-7g
-  --execute function
-  --get_dblink_acc_num_display('ZDB-FDBCONT-090529-1','dre-let-7g')
-
-  else
-
-    -- we need to prepend 'wz' to the acc_num
-
-    -- spew out exactly what came in
-    dblinkAccNumDisplay = dblinkAccNum;
-
-  end if;
-
+  dblinkAccNumDisplay = dblinkAccNum;
   return dblinkAccNumDisplay;
  end
 

source/org/zfin/db/postGmakePostloaddb/1165/ZFIN-9444.sql

@@ -0,0 +1,46 @@
+--liquibase formatted sql
+--changeset cmpich:ZFIN-9444.sql
+
+insert into foreign_db_contains_display_group_member
+    (fdbcdgm_fdbcont_zdb_id, fdbcdgm_group_id, fdbcdgm_can_view, fdbcdgm_can_add, fdbcdgm_can_edit, fdbcdgm_can_delete)
+values ('ZDB-FDBCONT-040412-31', 12, true, true, true, true);
+
+create temp table id
+(
+    id text
+);
+
+insert into id
+select get_id('BLASTDB');
+
+insert into blast_database
+(blastdb_zdb_id, blastdb_name, blastdb_abbrev, blastdb_description, blastdb_public,
+ blastdb_type, blastdb_tool_display_name,
+ blastdb_is_being_processed, blastdb_origination_id)
+select id,
+       'Published RNA Washington',
+       'wz_est',
+       'EST sequences curated by ZFIN staff from publications.',
+       false,
+       'nucleotide',
+       'Published RNA',
+       false,
+       2
+from id;
+
+update foreign_db_contains
+set fdbcont_primary_blastdb_zdb_id = (select id from id)
+where fdbcont_zdb_id = 'ZDB-FDBCONT-040412-31';
+
+update foreign_db
+set fdb_db_query = '/action/blast/display-sequence?accession='
+where fdb_db_name = 'WashUZ';
+
+update db_link
+set dblink_acc_num = db_link.dblink_acc_num_display
+where dblink_fdbcont_zdb_id = 'ZDB-FDBCONT-040412-31';
+
+update db_link
+set dblink_acc_num = db_link.dblink_acc_num_display,
+    dblink_info = dblink_info || ', added prefix wz to accession '||CURRENT_DATE
+where dblink_fdbcont_zdb_id = 'ZDB-FDBCONT-040412-31';

source/org/zfin/sequence/blast/Database.java

@@ -177,6 +177,7 @@ public static enum AvailableAbbrev {
         ZFIN_MICRORNA("zfin_microRNA"),
         ZFIN_MIRNA_STEMLOOP("zfin_miRNA_stemloop"),
         ZFIN_MIRNA_MATURE("zfin_miRNA_mature"),
+        WZ_EST("wz_est"),
         ZFIN_MRPH("zfin_mrph"),
         ZFIN_TALEN("zfin_talen"),
         ZFIN_CRISPR("zfin_crispr"),