Skip to content

Commit

Permalink
fix imargi_ant.py
Browse files Browse the repository at this point in the history
  • Loading branch information
frankyan committed Jul 16, 2020
1 parent 7338931 commit 4ae3b15
Show file tree
Hide file tree
Showing 6 changed files with 2,028 additions and 1 deletion.
379 changes: 379 additions & 0 deletions .ipynb_checkpoints/README-checkpoint.md

Large diffs are not rendered by default.

477 changes: 477 additions & 0 deletions docs/build/html/.ipynb_checkpoints/commandline_api-checkpoint.html

Large diffs are not rendered by default.

369 changes: 369 additions & 0 deletions docs/build/html/.ipynb_checkpoints/index-checkpoint.html

Large diffs are not rendered by default.

569 changes: 569 additions & 0 deletions docs/build/html/.ipynb_checkpoints/installation-checkpoint.html

Large diffs are not rendered by default.

233 changes: 233 additions & 0 deletions docs/build/html/.ipynb_checkpoints/search-checkpoint.html
Original file line number Diff line number Diff line change
@@ -0,0 +1,233 @@


<!DOCTYPE html>
<!--[if IE 8]><html class="no-js lt-ie9" lang="en" > <![endif]-->
<!--[if gt IE 8]><!--> <html class="no-js" lang="en" > <!--<![endif]-->
<head>
<meta charset="utf-8">

<meta name="viewport" content="width=device-width, initial-scale=1.0">

<title>Search &mdash; iMARGI Pipeline 1.1 documentation</title>















<link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
<link rel="index" title="Index" href="genindex.html" />
<link rel="search" title="Search" href="#" />


<script src="_static/js/modernizr.min.js"></script>

</head>

<body class="wy-body-for-nav">


<div class="wy-grid-for-nav">


<nav data-toggle="wy-nav-shift" class="wy-nav-side">
<div class="wy-side-scroll">
<div class="wy-side-nav-search">



<a href="index.html" class="icon icon-home"> iMARGI Pipeline



</a>







<div role="search">
<form id="rtd-search-form" class="wy-form" action="#" method="get">
<input type="text" name="q" placeholder="Search docs" />
<input type="hidden" name="check_keywords" value="yes" />
<input type="hidden" name="area" value="default" />
</form>
</div>


</div>

<div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="main navigation">






<ul>
<li class="toctree-l1"><a class="reference internal" href="index.html">Overview</a></li>
</ul>
<ul>
<li class="toctree-l1"><a class="reference internal" href="installation.html">Tools and Installation</a></li>
<li class="toctree-l1"><a class="reference internal" href="quick_example.html">Quick Start Example</a></li>
<li class="toctree-l1"><a class="reference internal" href="step_by_step_illustration.html">Step-by-step Illustration</a></li>
<li class="toctree-l1"><a class="reference internal" href="further_analysis.html">Further Analysis and Visualization Guides</a></li>
<li class="toctree-l1"><a class="reference internal" href="technical_note.html">Technical Notes</a></li>
<li class="toctree-l1"><a class="reference internal" href="faq_win_mac.html">Guides for Issues on Windows and macOS System</a></li>
<li class="toctree-l1"><a class="reference internal" href="commandline_api.html">Command-line API</a></li>
</ul>



</div>
</div>
</nav>

<section data-toggle="wy-nav-shift" class="wy-nav-content-wrap">


<nav class="wy-nav-top" aria-label="top navigation">

<i data-toggle="wy-nav-top" class="fa fa-bars"></i>
<a href="index.html">iMARGI Pipeline</a>

</nav>


<div class="wy-nav-content">

<div class="rst-content">

















<div role="navigation" aria-label="breadcrumbs navigation">

<ul class="wy-breadcrumbs">

<li><a href="index.html">Docs</a> &raquo;</li>

<li>Search</li>


<li class="wy-breadcrumbs-aside">



</li>

</ul>


<hr/>
</div>
<div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
<div itemprop="articleBody">

<noscript>
<div id="fallback" class="admonition warning">
<p class="last">
Please activate JavaScript to enable the search
functionality.
</p>
</div>
</noscript>


<div id="search-results">

</div>

</div>

</div>
<footer>


<hr/>

<div role="contentinfo">
<p>
&copy; Copyright 2019, Zhong Lab, UCSD. iMARGI-Docker code licensed under the BSD 2 License. Documentation licensed under CC BY 3.0

</p>
</div>
Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a <a href="https://github.com/rtfd/sphinx_rtd_theme">theme</a> provided by <a href="https://readthedocs.org">Read the Docs</a>.

</footer>

</div>
</div>

</section>

</div>







<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'1.1',
LANGUAGE:'None',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true,
SOURCELINK_SUFFIX: '.txt'
};
</script>
<script type="text/javascript" src="_static/jquery.js"></script>
<script type="text/javascript" src="_static/underscore.js"></script>
<script type="text/javascript" src="_static/doctools.js"></script>
<script type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.1/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
<script type="text/javascript" src="_static/searchtools.js"></script>




<script type="text/javascript" src="_static/js/theme.js"></script>

<script type="text/javascript">
jQuery(function () {
SphinxRtdTheme.Navigation.enable(true);
});
</script>
<script type="text/javascript">
jQuery(function() { Search.loadIndex("searchindex.js"); });
</script>

<script type="text/javascript" id="searchindexloader"></script>



</body>
</html>
2 changes: 1 addition & 1 deletion src/imargi_ant.py
Original file line number Diff line number Diff line change
Expand Up @@ -158,7 +158,7 @@ def annotate_region(ant, chr_str, pos, strand, match_length, min_over, strand_ty
else:
if strand_type == 'r':
strand = '-' if strand == '+' else '+'
else:
if strand_type == 'n':
strand = '.'

if strand == '.':
Expand Down

0 comments on commit 4ae3b15

Please sign in to comment.