fix libdeflate missing on mac M-chip

Zilong-Li · Dec 21, 2024 · a2e9a91 · a2e9a91
1 parent dd5ef52
commit a2e9a91
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Showing 2 changed files with 7 additions and 2 deletions.
diff --git a/configure b/configure
@@ -8,8 +8,12 @@ HTSLIB_DIR="src/htslib-1.21"
 echo "Configuring HTSlib in $HTSLIB_DIR"
 cd $HTSLIB_DIR
 ## copy file instead of symbolic linking
-cp htscodecs_bundled.mk htscodecs.mk 
-./configure CFLAGS="-O2 -fPIC" 
+cp htscodecs_bundled.mk htscodecs.mk
+if [ "$(uname)" = "Darwin" ]; then
+    ./configure --without-libdeflate  CFLAGS="-O2 -fPIC"
+else
+    ./configure CFLAGS="-O2 -fPIC"
+fi    
 
 make libhts.a
 
diff --git a/cran-comments.md b/cran-comments.md
@@ -1,4 +1,5 @@
 v0.7.0
+* address issues on https://cran.r-project.org/web/checks/check_results_vcfppR.html
 * fix parsing BCF when subsetting sample ids and the genomic region at the same time
 * fix `vcfcomp` with `stats="nrc"` when the input vectors have different length
 * use the latest version of htslib v1.21