fix configure

Zilong-Li · Dec 14, 2024 · fb156e8 · fb156e8
1 parent e6c2d8f
commit fb156e8
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/configure b/configure
@@ -2,4 +2,4 @@
 
 HTSLIB_DIR="src/htslib-1.21"
 echo "Configuring HTSlib in $HTSLIB_DIR"
-cd $HTSLIB_DIR && ./configure && make
+cd $HTSLIB_DIR && ./configure --enable-static --disable-shared --without-libdeflate && make
diff --git a/src/Makevars b/src/Makevars
@@ -1,6 +1,6 @@
 HTSLIB_DIR='htslib-1.21'
 PKG_CPPFLAGS = -I${HTSLIB_DIR} -I../inst/include
-PKG_LIBS = ${HTSLIB_DIR}/libhts.a -fPIC -lz -lm -lbz2 -llzma -lcurl
+PKG_LIBS = ${HTSLIB_DIR}/libhts.a -lz -lm -lbz2 -llzma -lcurl
 
 .PHONY: all clean 
 

diff --git a/src/htslib-1.21/htscodecs/htscodecs/fqzcomp_qual.c b/src/htslib-1.21/htscodecs/htscodecs/fqzcomp_qual.c
@@ -270,7 +270,7 @@ static void dump_map(unsigned int *map, int size, char *name) {
     fprintf(stderr, "}\n");
 }
 
-#pragma GCC diagnostic ignored "-Wunused-function"
+/* #pragma GCC diagnostic ignored "-Wunused-function" */
 static void dump_params(fqz_gparams *gp) {
     fprintf(stderr, "Global params = {\n");
     fprintf(stderr, "\tvers\t%d\n", gp->vers);