Shared code base for Amy and Adam
. |---VISRAM | └-------Mouse 1,2,3, etc. | └-------Day 1,2,3, etc. | └-------Behavior | └-------Calcium | | | └-------Raw | | | └-------Decompressed | | | └-------Movies | | | └------- CellMax (for rec_ files, class.txt, output | └-------Analysis (for cell traces and behavior tracking info).
movie processing steps will be saved as hdf5 files, with the .h5 extension. They will be named according to the mouse, recording area, day, and the processing steps, as follows: m1_visp_d1_ds_nhp.h5 (after loading, mouse 1, primary visual cortex, day 1, downsampled, no hot pixels) m1_visp_d1_reg.h5 (after motion registration, mouse 1, primary visual cortex, day 1, registered) m1_visp_d1_proc.h5 (after processing, this goes into cellmax, mouse 1, primary visual cortex, day 1, processed))