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Fix broken links after removing multiscale and chunked tutorials (#90)
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melissawm authored Dec 4, 2024
1 parent 30877db commit 493f759
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2 changes: 1 addition & 1 deletion docs/tutorials/setup_acquisition/configure.md
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Expand Up @@ -65,7 +65,7 @@ config.video[0].camera.settings.pixel_type = acquire.SampleType.U16
## Configure `Storage`
`Storage` objects have 2 attributes, `settings`, a `StorageProperties` object, and an optional attribute `identifier`, which is an instance of the `DeviceIdentifier` class described above.

`StorageProperties` has 2 attributes `external_metadata_json` and `filename` which are strings of the filename or filetree of the output metadata in JSON format and image data in whatever format corresponds to the selected storage device, respectively. `first_frame_id` is an integer ID that corresponds to the first frame of the current acquisition and is typically 0. `pixel_scale_um` is the camera pixel size in microns. `acquisition_dimensions` is a list of `StorageDimension`, one for each acquisition dimension, ordered from fastest changing to slowest changing. For more information on using the `StorageDimension` class, check out [Chunking Data for Zarr Storage](../zarr/chunked.md). `enable_multiscale` is a boolean used to specify if the data should be saved as an image pyramid. See the [Multiscale tutorial](../zarr/multiscale.md) for more information.
`StorageProperties` has 2 attributes `external_metadata_json` and `filename` which are strings of the filename or filetree of the output metadata in JSON format and image data in whatever format corresponds to the selected storage device, respectively. `first_frame_id` is an integer ID that corresponds to the first frame of the current acquisition and is typically 0. `pixel_scale_um` is the camera pixel size in microns. `acquisition_dimensions` is a list of `StorageDimension`, one for each acquisition dimension, ordered from fastest changing to slowest changing. `enable_multiscale` is a boolean used to specify if the data should be saved as an image pyramid.

We'll specify the name of the output image file below.

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2 changes: 1 addition & 1 deletion docs/tutorials/zarr/compressed.md
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Expand Up @@ -63,7 +63,7 @@ import zarr
compressed = zarr.open(config.video[0].storage.settings.filename)
```

We'll print some of the data properties to illustrate how the data was compressed. Since we have not enabled [multiscale](multiscale.md) output, `out.zarr` will only have one top level array`"0"`.
We'll print some of the data properties to illustrate how the data was compressed. Since we have not enabled multiscale output, `out.zarr` will only have one top level array`"0"`.


```python
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