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Working from Latin America
🌎
Working from Latin America
39 followers · 71 following

Achievements

Achievement: QuickdrawAchievement: YOLOAchievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2

Achievements

Achievement: QuickdrawAchievement: YOLOAchievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2

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Organizations

@CSIM-Toolkits @LOAMRI

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acsenrafilho/README.md

Hi there! 👋 I'm Antonio Senra Filho, AI specialist and Researcher

Banner Image

  • 🔭 I’m currently working on Medical imaging processing research
  • 📫 How to reach me: [email protected]

Linkedin: Antonio Static Badge Static Badge Static Badge

Projects Quick View

Python Tools

 asltk library was designed to assist users in processing Arterial Spin Labeling (ASL) MRI images, from basic imaging protocols to the state-of-the-art models provided in the scientific literature documentation

cucaracha open-source library crafted to help with digital document analysis and processing documentation

Medical Imaging Tools (3D Slicer Extensions)

Tip: Install the following 3D Slicer Extensions using the official Slicer Extension Manager tool

 ASL Toolkit 3D Slicer extension to allow a variate of image processing and analysis methods to Arterial Spin Labelling MRI images documentation

Anomalous Diffusion Filters 3D Slicer extension to provide Anomalous Diffusion based filters for image denoising documentation

Lesion Spotlight 3D Slicer extension to provide image segmentation and local image contrast enhancement approaches in order to detect abnormal white matter voxels signals in magnetic resonance images documentation

Brain Lesion Simulator 3D Slicer extension to offer a set of tools for brain lesion simulation, based on MRI images documentation

Diffusion Complexity Mapping 3D Slicer extension designed to assist users in processing Diffusion Tensor Imaging (DTI) for the Diffusion Complexity mapping documentation

DTI-ALPS Index Calculator 3D Slicer extension designed to assist users in processing Diffusion Tensor Imaging (DTI) for the DTI-ALPS index calculation documentation

Brain Volume Refinement 3D Slicer extension for controlling the manual interference in the brain volume refinement after an automatic skull stripping documentation

Medical Imaging Tools (Scripts and other facilities)

  1. relaxophantom
    • Paper: Senra Filho, A. C. da S. (2016). Volumetric T1 and T2 magnetic resonance brain toolkit for relaxometry mapping simulation. Research on Biomedical Engineering, 32(3), 301–305. http://doi.org/10.1590/2446-4740.00916
  2. templateCreator
    • Description: templateCreator is a set of shell scripts pipelines designed to create DTI (Diffusion Tensor Imaging) templates. This repository contains all the necessary scripts and instructions to generate high-quality DTI templates.

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  1. cucaracha cucaracha Public

    A bureaucratic cockroach (cucaracha) assistent to help in document processing and analysis

    Python 1 1

  2. LOAMRI/asltk LOAMRI/asltk Public

    The Arterial Spin Labeling (ASL) toolkit offer a general imaging processing api for ASL MRI techniques.

    Python

  3. LOAMRI/Slicer-DTI-ALPS LOAMRI/Slicer-DTI-ALPS Public

    Slicer Module to calculate the diffusion tensor image analysis along the perivascular space (DTI-ALPS)

    Python 5 1

  4. CSIM-Toolkits/SlicerDiffusionComplexityMap CSIM-Toolkits/SlicerDiffusionComplexityMap Public

    Slice module to offer the Diffusion Complexity Map algorithm

    C++ 1

  5. CSIM-Toolkits/Slicer-LesionSimulatorExtension CSIM-Toolkits/Slicer-LesionSimulatorExtension Public

    3D Slicer extension that provides a toolkit for Multiple Sclerosis lesion simulation in multimodal MRI images, such as T1, T2, T2-FLAIR and DTI scalar maps.

    C++ 7 2

  6. CSIM-Toolkits/AnomalousFiltersExtension CSIM-Toolkits/AnomalousFiltersExtension Public

    3D Slicer extension that provides several approaches in order to apply the anomalous spatial filters on medical images.

    C++ 3